Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi41g00080 ATGGGCAACAACTGTGTGGGACCAAACCTCGGTGGGAATGGTTTCCTTCAATCCGTTTCGGCGGCGGTGTGGAAAACCCGCGCACCGGAGGCCAGTCTTCCGCCGCCGAACTCCGACGACAAGAACAAATCTCCGGCACCAGCGAATGCGGCCAGCGATTCTTCCAATGGAGGAGGGTCGAGTTCCGCCGGCAAAGGTTCCGATGCTTCAAATAATAATCGCTCTGACGGTTCCAGAGGAGTTGATCCTCCAATGCCGGTTCAGAGCACACCGCCTGAACAGGTGAAAATAACCGCCACGGAAACAAAACCGGGTCAGGTTCAACCGGAGAAGCCGCAGGTAAATAACGAACCGGCATCTAGCGCTGGTGGTGGTGGCGATGCAGGGAAAGCTAAGAAACCTACTCATGTGAAAAGGGTATCTAGTGTTGGACTTCAAGTGGAATCTGTGTTGGGTAGGAAAACAGAGAATTTGAAGGATTTTTACAGTTTGGGGAGGAAGCTTGGGCAAGGGCAATTTGGGACAACTTTCCTTTGTGTGGAGAAGGGGACTAACAAAGATTTTGCTTGTAAATCCATTGCAAAGAGGAAATTGACCACACAGGAGGATGTTGAGGATGTTAGGAGGGAGATTCAGATCATGCACCACTTGGCTGGTCACCCCAATGTGATACAAATAATTGGTGCTTATGAGGATGCAGTTGCTGTCCATGTTGTCATGGAGCTCTGTGCTGGTGGGGAGCTATTTGACAGGATCATACAGAGGGGGCATTACACTGAGAGAAAGGCGGCTGAACTTGCGAGATTGATAGTCAGTGTTGTTGAGGCTTGCCATTCTTTAGGTGTCATGCATAGGGACTTGAAGCCAGAAAATTTTCTCTTCATCAACAATGAAGAAGAATCACCACTTAAGACAATAGATTTTGGACTCTCGGTTTTCTTTAGGCCAGGTGAAACATTTACTGATGTGGTTGGGAGTCCGTACTATGTGGCCCCTGAAGTTTTGCGGAAGCAATATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATTTATATTTTACTCAGTGGAGTTCCCCCATTTTGGGACGAAACGGAACAGGGAATATTTGAGCAAGTATTGAGAGGAGAGCTTGACTTTGTTTCTGAACCATGGCCAAGCATATCTGAAAGTGCTAAGGATCTTGTTCGAAGAATGCTTATAAGGGACCCTAAGAAACGGTTGACAGCACATGAAGTTCTTTGCCACCCTTGGGTTCAGGTTGGAGGTGTTGCTCCTGATAAACCGCTTGATTCTGCTGTCTTAACTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTAAAAAAAATAGCCATTCGAGTAATTGCTGAAAGTCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTAGAGAGAGTGGGTTCCGTTCTTAAGGATTCTGAAATTAACTGGTTAATGCAAGCGGCAGACGTTGATAACAGTGGTACCATAGACTACGGTGAATTCATAGCGGCAATGCTTCATCTAAACAAGATCCAAAAGGAGGATCATCTATTTGCAGCCTTCTCTTACTTTGATAAAGATGGTAGTGGATACATTACAAAGGACGAGCTCCAACAAGCCTGTGAACAGTTTGGCTTAAAAGATTATCATCTAGATGATATAATACGCGAAGTTGATCGGGATAATGATGGACGCATTGATTACAGTGAGTTTGTTGCAATGATGGAAGACACTGGTTTTGGCAAAAAGGGGTTATGA 1827 0.4554 MGNNCVGPNLGGNGFLQSVSAAVWKTRAPEASLPPPNSDDKNKSPAPANAASDSSNGGGSSSAGKGSDASNNNRSDGSRGVDPPMPVQSTPPEQVKITATETKPGQVQPEKPQVNNEPASSAGGGGDAGKAKKPTHVKRVSSVGLQVESVLGRKTENLKDFYSLGRKLGQGQFGTTFLCVEKGTNKDFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQIIGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFINNEEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKQYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLRGELDFVSEPWPSISESAKDLVRRMLIRDPKKRLTAHEVLCHPWVQVGGVAPDKPLDSAVLTRLKQFSAMNKLKKIAIRVIAESLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEINWLMQAADVDNSGTIDYGEFIAAMLHLNKIQKEDHLFAAFSYFDKDGSGYITKDELQQACEQFGLKDYHLDDIIREVDRDNDGRIDYSEFVAMMEDTGFGKKGL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi41g00080 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Sebi41g00080 608 Gene3D - 436 529 - -
Sebi41g00080 608 MobiDBLite consensus disorder prediction 37 78 - -
Sebi41g00080 608 ProSiteProfiles EF-hand calcium-binding domain profile. 573 604 IPR002048 GO:0005509
Sebi41g00080 608 MobiDBLite consensus disorder prediction 91 120 - -
Sebi41g00080 608 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Sebi41g00080 608 PANTHER SERINE/THREONINE-PROTEIN KINASE 154 594 - -
Sebi41g00080 608 ProSiteProfiles Protein kinase domain profile. 162 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi41g00080 608 ProSitePatterns EF-hand calcium-binding domain. 582 594 IPR018247 -
Sebi41g00080 608 ProSiteProfiles EF-hand calcium-binding domain profile. 499 534 IPR002048 GO:0005509
Sebi41g00080 608 Pfam EF-hand domain pair 538 599 IPR002048 GO:0005509
Sebi41g00080 608 Pfam EF-hand domain pair 468 528 IPR002048 GO:0005509
Sebi41g00080 608 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Sebi41g00080 608 SMART efh_1 467 495 IPR002048 GO:0005509
Sebi41g00080 608 SMART efh_1 503 531 IPR002048 GO:0005509
Sebi41g00080 608 SMART efh_1 573 601 IPR002048 GO:0005509
Sebi41g00080 608 SMART efh_1 539 567 IPR002048 GO:0005509
Sebi41g00080 608 CDD STKc_CAMK 161 419 - -
Sebi41g00080 608 FunFam Calcium-dependent protein kinase 1 164 247 - -
Sebi41g00080 608 Pfam Protein kinase domain 162 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi41g00080 608 ProSiteProfiles EF-hand calcium-binding domain profile. 535 570 IPR002048 GO:0005509
Sebi41g00080 608 MobiDBLite consensus disorder prediction 26 140 - -
Sebi41g00080 608 FunFam Calcium-dependent protein kinase SK5 248 432 - -
Sebi41g00080 608 SMART serkin_6 162 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi41g00080 608 ProSitePatterns EF-hand calcium-binding domain. 548 560 IPR018247 -
Sebi41g00080 608 Gene3D Phosphorylase Kinase; domain 1 164 247 - -
Sebi41g00080 608 SUPERFAMILY Protein kinase-like (PK-like) 160 421 IPR011009 -
Sebi41g00080 608 Gene3D Transferase(Phosphotransferase) domain 1 248 424 - -
Sebi41g00080 608 FunFam Calcium-dependent protein kinase 1 428 602 - -
Sebi41g00080 608 SUPERFAMILY EF-hand 460 598 IPR011992 -
Sebi41g00080 608 ProSitePatterns Protein kinases ATP-binding region signature. 168 195 IPR017441 GO:0005524
Sebi41g00080 608 Gene3D - 446 598 - -
Sebi41g00080 608 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi41g00080 Sebi-Chr41 2660192 2665910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi41g00080 1 608 EF-hand Containing Proteins AT2G38910 73.977 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi41g00080 Pkinase 1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi41g00080 K13412 - gmx:100813232 1008.44