Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi41g00047 ATGGGCGTCAATTCCTTGCCATCGGAGCAATCTACCTTCGATCTCGACGAGCAGATCTCACAGCTCATGCAATGCAAGCCACTTTCCGAGCAACAGGTTAGAGTTTTATGCGAGAAGGCTAAGGAGATTTTTATGAGTGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTCCGAATTGGAGGGAAGTGCCCAGATACTAATTACTTGTTCATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACACTCCTTGTGGCACTGAAAGTGCGGTATCCTCAGCGAATTACAGTTCTTAGAGGAAACCATGAAAGCCGACAGATCACTCAAGTATATGGATTTTACGATGAATGCCTAAGAAAGTATGGTAATGCTATTGTTTGGAAGATCTTTACAGACCTTTTTGATTTCTTTCCATTGACTGCATTGGTTGAATCAGAAATCTTTTGTTTGCATGGTGGACTTTCACCTTCAATTGAGACCCTTGATAACATAAGGAGCTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTGTTGTGGTCTGACCCAGATGATAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGGTATACTTTTGGCCAGGATATATCTGAACAATTTAATCACACAAACAGTCTTAAGTTGATTGCTAGAGCTCATCAGCTAGTTATGGATGGATTCAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGCTATCGATGTGGGAACATGGCTTCCATTTTGGAGGTTGACGATTCCAAAGGCCACACATTTATCCAGTTTGAACCTGCTCCCCGGAGAGGAGAACCTGATGTCACCCGTAACATTCCACTTATTTGTGACGCACAAGAACTTGCTGGACACCCTGTTGGAGAAGTCGCCTAG 984 0.437 MGVNSLPSEQSTFDLDEQISQLMQCKPLSEQQVRVLCEKAKEIFMSESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITVLRGNHESRQITQVYGFYDECLRKYGNAIVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRSFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFEPAPRRGEPDVTRNIPLICDAQELAGHPVGEVA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi41g00047 327 Pfam Calcineurin-like phosphoesterase 56 247 IPR004843 GO:0016787
Sebi41g00047 327 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 14 305 IPR047129 GO:0004722
Sebi41g00047 327 SUPERFAMILY Metallo-dependent phosphatases 9 299 IPR029052 -
Sebi41g00047 327 CDD MPP_PP2A_PP4_PP6 14 298 - -
Sebi41g00047 327 FunFam Serine/threonine-protein phosphatase 7 313 - -
Sebi41g00047 327 Gene3D - 7 312 IPR029052 -
Sebi41g00047 327 SMART pp2a_7 28 298 IPR006186 GO:0016787
Sebi41g00047 327 ProSitePatterns Serine/threonine specific protein phosphatases signature. 119 124 IPR006186 GO:0016787
Sebi41g00047 327 PRINTS Serine/threonine phosphatase family signature 153 179 IPR006186 GO:0016787
Sebi41g00047 327 PRINTS Serine/threonine phosphatase family signature 56 83 IPR006186 GO:0016787
Sebi41g00047 327 PRINTS Serine/threonine phosphatase family signature 182 209 IPR006186 GO:0016787
Sebi41g00047 327 PRINTS Serine/threonine phosphatase family signature 260 276 IPR006186 GO:0016787
Sebi41g00047 327 PRINTS Serine/threonine phosphatase family signature 118 142 IPR006186 GO:0016787
Sebi41g00047 327 PRINTS Serine/threonine phosphatase family signature 238 258 IPR006186 GO:0016787
Sebi41g00047 327 PRINTS Serine/threonine phosphatase family signature 85 112 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi41g00047 Sebi-Chr41 2144950 2151222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi41g00047 9 244 Calmodulin-binding Proteins AT5G63870 33.813 4.93e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi41g00047 K04382 - gmx:100817449 622.083