Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi41g00028 ATGTTGTGCTGCGGGGGTGCAGAAGAAGATATCAGCGGTCTACCTGCAAACCATTACAGTACATCACCTAGAGGGGGTAATACATACGGTGGTGGAGGAGGCGGTGACAGAGGAGAGCCAAAGGGCAATGTTGTTAAGAGTGGTGCTCCGCAGAAAGCATTACCAATTGAGATACCCGCTATTCCATTGGATGAGTTAAATCGGTTAACAGACAACTTTGGTACAAAGGCTTTGATTGGAGAAGGTTCCTATGGGAGGGTTTACCATGCAAAGTTGAGCAATGGTTTAGATGCTGCAATTAAGAAGCTGGATACTAGTTCTTCGCCAGAACCTGACTCTGATTTTGCAGTACAGGCTTTTGATGTTTCAGGAAGGAAAGGAGTGCAAGGAGCTGAACCTGGTCCAGTTTTGAACTGGAACCAAAGAGTAAAAATTGCTTTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAGAAGGTTCAGCCTTCTATAGTTCATCGCGATGTTAGATCCAGCAATGTGTTATTATTCAATGACTATGAGGCTAAGATTGCAGATTTCAGTTTGACAAATCAGTCTTCTGACACAGCAGCCAGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCTGAGTATGCTTGA 654 0.4419 MLCCGGAEEDISGLPANHYSTSPRGGNTYGGGGGGDRGEPKGNVVKSGAPQKALPIEIPAIPLDELNRLTDNFGTKALIGEGSYGRVYHAKLSNGLDAAIKKLDTSSSPEPDSDFAVQAFDVSGRKGVQGAEPGPVLNWNQRVKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi41g00028 217 Gene3D Phosphorylase Kinase; domain 1 43 121 - -
Sebi41g00028 217 Pfam Protein tyrosine and serine/threonine kinase 136 215 IPR001245 GO:0004672|GO:0006468
Sebi41g00028 217 SMART tyrkin_6 73 216 IPR020635 GO:0004713|GO:0006468
Sebi41g00028 217 ProSiteProfiles Protein kinase domain profile. 23 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi41g00028 217 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 119 - -
Sebi41g00028 217 Gene3D Transferase(Phosphotransferase) domain 1 128 217 - -
Sebi41g00028 217 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Sebi41g00028 217 MobiDBLite consensus disorder prediction 13 47 - -
Sebi41g00028 217 SUPERFAMILY Protein kinase-like (PK-like) 53 216 IPR011009 -
Sebi41g00028 217 ProSitePatterns Tyrosine protein kinases specific active-site signature. 164 176 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi41g00028 Sebi-Chr41 977898 979150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi41g00028 64 217 Receptor kinase-like Gene Family AT4G02010 37.766 4.74e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Sebi41g00028 PK_Tyr_Ser-Thr 1.3e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi41g00028 - - gmx:100786291 352.443