Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi41g00024 ATGGAGCTCGCTTTGAGCTTAGGAGACACACCAAAGCCCTTCTCTTTCCTCGACAAGCCCACAAAAGACCCACCGGGTTTCTGCATAGCACGAGGAGGTACTACTTTCACCGCAGAGGAAAAAAATGGCGACGATGAAACAAGAGGTTCTTCAGATCCACCCGTTCAGCTAGACCTTCTTCCTTTCACTCCGGTTCTCAGATCCAACCCTTCTTCTCACCTTAAAATCCCTTGGCTCACCGATCCATTGTTAGTTGCACGCGATGAACGAATGAGGCTGGACGTGAACCGTTTCCCGGTGGCGACGGCGGCGGTTGAAGACGGCGACGACGGTACCTCACTGTCGTCATCCCCTAACAGTGCGGTGTCACCGTTTCAAATGGATTTCGGTATGAGGAATAGCAATGCAGAGTACGGTGCGAGAAACAAGAGAGAACACGAGGGTGAGGCAGAGAGAGCGAGTTCAAGAGCGAGTGATGACGAGGAAAACGGGTCAACTCGGAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTTCTAGAAGAAAGCTTCAAAGAACACTCCACTCTCAATCCTAAGCAGAAACTTGCACTGGCAAAACAGTTGAATCTTCGTCCTCGTCAAGTGGAAGTTTGGTTTCAGAATAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTGGATTGTGAGTATTTGAAGAGATTGTGTGACGCACTAACAGATGAGAATAGGAAGTTACAGAAGGAACTGCAAGAACTAAGAGCCTTGAAAACTTCTCAACCGTTTTACATGCAACTTCCAGCTACCACTCTCACCATGTGTCCCTCTTGTGAACGCGTAGCTACCAATCCCTGCACTGCCCCTACCAATCAAACTACAAACAACACTTATCCAATCCCAGTGGAGTTGTCGCTTAGCAAGCCCAGAATATTGCCCTTCTCTAATACCCAAGCCCAACAACAACAGGCCCAAACCCCCCAGATGGCTTCATGA 993 0.4864 MELALSLGDTPKPFSFLDKPTKDPPGFCIARGGTTFTAEEKNGDDETRGSSDPPVQLDLLPFTPVLRSNPSSHLKIPWLTDPLLVARDERMRLDVNRFPVATAAVEDGDDGTSLSSSPNSAVSPFQMDFGMRNSNAEYGARNKREHEGEAERASSRASDDEENGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRLCDALTDENRKLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNPCTAPTNQTTNNTYPIPVELSLSKPRILPFSNTQAQQQQAQTPQMAS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi41g00024 330 MobiDBLite consensus disorder prediction 109 130 - -
Sebi41g00024 330 Gene3D - 171 221 - -
Sebi41g00024 330 Pfam Homeodomain 167 221 IPR001356 GO:0003677
Sebi41g00024 330 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 294 - -
Sebi41g00024 330 MobiDBLite consensus disorder prediction 1 56 - -
Sebi41g00024 330 SMART HOX_1 165 227 IPR001356 GO:0003677
Sebi41g00024 330 Coils Coil 143 163 - -
Sebi41g00024 330 ProSitePatterns 'Homeobox' domain signature. 198 221 IPR017970 GO:0000981|GO:0006355
Sebi41g00024 330 ProSiteProfiles 'Homeobox' domain profile. 163 223 IPR001356 GO:0003677
Sebi41g00024 330 MobiDBLite consensus disorder prediction 106 171 - -
Sebi41g00024 330 SMART halz 223 266 IPR003106 GO:0006355|GO:0043565
Sebi41g00024 330 Pfam Homeobox associated leucine zipper 223 257 IPR003106 GO:0006355|GO:0043565
Sebi41g00024 330 SUPERFAMILY Homeodomain-like 159 224 IPR009057 -
Sebi41g00024 330 Coils Coil 229 259 - -
Sebi41g00024 330 MobiDBLite consensus disorder prediction 138 171 - -
Sebi41g00024 330 CDD homeodomain 167 224 IPR001356 GO:0003677
Sebi41g00024 330 FunFam Homeobox-leucine zipper protein 18 151 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi41g00024 Sebi-Chr41 875259 876540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi41g00024 159 318 Homeobox Transcription Factor Family AT4G37790 66.061 2.42e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi41g00024 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi41g00024 K09338 - gmx:100776113 417.542