Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi41g00023 ATGGAAAGTGAAGCTTTGAACGTGGATGATTGGATTGAGGAACCTTTTCACAGAATTAGTGAAGCAATGAGGCGTAGGGCTCGACATCGGCGGCGATGGCGCCATTACCACCAACGTCGTCATGCTCTTCATGATTTTCCTGAACCTCATGTTCATGATGTCCCGAGTGAAGCTTGGTGGCGCCAATTTGCCACCGCGGAAGATATGTCTTTTGAATTGAATCACTTTTTGGTTAATTCTGGCAATGGAAGTGTGCTGCAGACTGGGGAAGGCAGTGTGACAGCTGAGGAAAGAGCAGAGGAGGTGCCAAAGGCATGTGACATTAACAACTGTGGTGTTACATTGGATGAGACATCAGAGAAGGAGGAGGATGTTGAAAAGGGCCGTGGTAATGATGGCGGGTTTTTCGATTGCAATATTTGTTTGGACCTGGCTAAGGACCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTGTATATACATGGCTGCATTTGCATTCGGATTCTAAGGAATGTCCAGTTTGCAAAGGAGAAGTTACTGTTGATAGTGTTACCCCGATATATGGTCGTGGGAACAATGCCCGTGTTCCTGATGAAGATTCCACCCTGAAAATCCCTCTCAGGCCCAATGCAAGGCATGTCTCAGAGGATTCAACTTTGAGACAAAGCATTCAAAGGAATGTGTTTACTATGCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGACTCGATCTTAATCAGGATTTAGTTCAGCCAAATGAGCATGACAATGCACCCGAAACAGGAGAGAGGGCTAGTTCCTTGTTGAGTAGGTCTATGGCAGCTAGGCTGCCTAGATATGTTAGGAGAGAGCATAACCTTGGTGCAGCACCCCCAGATGATGCAGTGAGTTTAACACAGAACAGTATAGGCGGTTCTTTGGTTGGGGATAGCCGCAGGGTACAAACCCTTTTGCTTCGAAGAATGCAAGCACATAGAGGAACCTTTTCATCAACATTGAGTTCTGCTGAAAGGTTAGTTGAGGCATATTTCCATAACAATCCATTAGGTAGAAACCGAGAACAACCTCCTCCTGTTGAAGACAGGGATTCCTTTTCTAGCATTGGTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTGTCCTTGTCAACATCCACTTCCAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTCGATAGTGGAGATTCTCGTGCTCCAAGGCGAAGACGTTTGAACTAA 1278 0.4585 MESEALNVDDWIEEPFHRISEAMRRRARHRRRWRHYHQRRHALHDFPEPHVHDVPSEAWWRQFATAEDMSFELNHFLVNSGNGSVLQTGEGSVTAEERAEEVPKACDINNCGVTLDETSEKEEDVEKGRGNDGGFFDCNICLDLAKDPVVTCCGHLFCWPCVYTWLHLHSDSKECPVCKGEVTVDSVTPIYGRGNNARVPDEDSTLKIPLRPNARHVSEDSTLRQSIQRNVFTMPVEEMIRRLGSRLDLNQDLVQPNEHDNAPETGERASSLLSRSMAARLPRYVRREHNLGAAPPDDAVSLTQNSIGGSLVGDSRRVQTLLLRRMQAHRGTFSSTLSSAERLVEAYFHNNPLGRNREQPPPVEDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSTSRRRNDASRVSDVDSGDSRAPRRRRLN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi41g00023 425 ProSitePatterns Zinc finger RING-type signature. 153 162 IPR017907 -
Sebi41g00023 425 Pfam Zinc finger, C3HC4 type (RING finger) 138 178 - -
Sebi41g00023 425 MobiDBLite consensus disorder prediction 393 425 - -
Sebi41g00023 425 CDD RING-HC_AtRMA-like 136 179 - -
Sebi41g00023 425 SUPERFAMILY RING/U-box 135 191 - -
Sebi41g00023 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 109 311 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sebi41g00023 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 192 IPR013083 -
Sebi41g00023 425 FunFam Zinc finger family protein 119 192 - -
Sebi41g00023 425 SMART ring_2 138 178 IPR001841 -
Sebi41g00023 425 MobiDBLite consensus disorder prediction 403 425 - -
Sebi41g00023 425 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi41g00023 Sebi-Chr41 816939 818216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi41g00023 3 416 C3H Transcription Factor Family AT3G58030 48.268 8.18e-109 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi41g00023 K10666 - gmx:100811099 543.502