Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi41g00017 ATGTCTAGAAATTCAGTTATGCATAGTGGTACTATTCAATTCCCCATAGAATCATCAGGATCAGAGATCTCAAATTTTTCTGGAAGGGTCTTCCAGAGTGAACAGGTGAAGCTATGGGACAGTCAAAGAGGCATGAAAGTCTCATTCAATTCAACATTTGTTTTCAATATTCAACCTGTAACCTCTCCTGGTGGTGAGGGATTAGCTTTCATATTAGCAGCCAACACCTCTCTTCCAAGTAACAGTGCAGGTCAATGGCTTGGGATTGTCAACTCAACAAGCATAGGGGTAAGTAACATTGTTGCAGTGGAGTTTGACACAAGGAAAAGCTACCCTGAAGATGTTGATGATAACCATGTTGGGGTGGATGTAAAAAGCATCTATTCCATCCAGCAAGAGCCTCTTGGAGCACATGGTGTTAATCTTTCAAGTGGCATTGATGTTATTGCAACCGTTCAGTTTGATGCCAAAGAAGGAAAAATGTCTATTTTTGTTTCTACATTAGGAGACTTGAAGTTGAAGACAGCAATGCTTACAGTGGATATTGATCTCTCTAAACTGCTTCCAGAAGATGTTTATGTGGGATTTTCAGCTTCCACAGGGGTATATACACAAGTTAACACAATAAAGTCATGGTATTTCTCAAGCTGGGAGTATATTGAGAAGGATCCACTCAATCTAATATGGTTATGGATATTGATTCCTATAATTGTGGTTGGAGGGGCATGTGGGCTTGGTGGTTTATATTACTGGAAAAGAATCCACAAAAAGGAACAAGGGCAAGAGGAGGATTTGCAGATAGAGCTTGAAATTAAAAGTTCATCTAATGCTCCACATAAATTTCACTTGAAGGAGCTTCTATCTGCCACCAAGAATTTCAACTCATCAAACAAGCTTGGGAAAGGAGGATTTGGGACAGTTTATAAAGGCACCTTAAATGGCAAGGATGTTGCTGTGAAAAGGATTTCAAAGGATTCAAGTCATGGGAAGCAAGATTTTATAGCTGAAATCACAACCATAGGCAATCTCAATCACAAAAATCTAGTGAAATTAATAGGATGGTGCTATGAAAAGGGTGAGTTACTACTTGTGTATGAGTTCATGCCAAATGGAAGCTTAGACAGATTCATTTTCTCTGGAGGAACCACAACATCTACAGGGGATTCAACTCTGAGTTGGGAAAGGAGGCTAAGTGTTATATGTGGAGTATCTAGAGCACTTGATTATCTTCACAATGGTTGTGATAAAAGAGTGCTACATAGAGACATAAAACCCAGCAATGTAATGTTGGATTCAGATTTCAATGCTAGACTTGGGGATTTTGGCTTAGCTAGAACCATTCATCTTAGTGAAAAAACTCACCACTCAACAAGAGAAATTGCTGGAACACCAGGATATATAGCACCAGAAAGCTTCCACACTCGAAGGGCTTCTGTTGAAACTGATGTTTATGCATTTGGTGTTCTGATGCTAGAAGTTGTCTGTGGAAGAAGAAAGCTTGAACACAAACAGTATCTAAATAATTATAATAATAGCATTATGGATTGGGTTTGGGAGCTTCATAGTGAAGAAAGCATAACTGATGCTGTAGATTTGAGACTGAATGGTGATTTTAATAAGGCTCAAGCTAGGTGTGTGCTTGAGTTGGGGTTAGCTTGTTGCCATCCCAACCCATATGAGAGGCCATCCATGAGAACTGTCATGCAGGTGCTACAAGGGGAAACAGCTCCACCATTTGTACCTGTTGAGAAACCTGCTTTTACATGGCCAGCAATAGCTCCTGTTCTCAAAGAAGAGTTAAATTCTAATACTACTGGATCAGAAAATGAACCAATAACAGAACTGATTAGTGGGAGATGA 1860 0.3957 MSRNSVMHSGTIQFPIESSGSEISNFSGRVFQSEQVKLWDSQRGMKVSFNSTFVFNIQPVTSPGGEGLAFILAANTSLPSNSAGQWLGIVNSTSIGVSNIVAVEFDTRKSYPEDVDDNHVGVDVKSIYSIQQEPLGAHGVNLSSGIDVIATVQFDAKEGKMSIFVSTLGDLKLKTAMLTVDIDLSKLLPEDVYVGFSASTGVYTQVNTIKSWYFSSWEYIEKDPLNLIWLWILIPIIVVGGACGLGGLYYWKRIHKKEQGQEEDLQIELEIKSSSNAPHKFHLKELLSATKNFNSSNKLGKGGFGTVYKGTLNGKDVAVKRISKDSSHGKQDFIAEITTIGNLNHKNLVKLIGWCYEKGELLLVYEFMPNGSLDRFIFSGGTTTSTGDSTLSWERRLSVICGVSRALDYLHNGCDKRVLHRDIKPSNVMLDSDFNARLGDFGLARTIHLSEKTHHSTREIAGTPGYIAPESFHTRRASVETDVYAFGVLMLEVVCGRRKLEHKQYLNNYNNSIMDWVWELHSEESITDAVDLRLNGDFNKAQARCVLELGLACCHPNPYERPSMRTVMQVLQGETAPPFVPVEKPAFTWPAIAPVLKEELNSNTTGSENEPITELISGR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi41g00017 619 CDD STKc_IRAK 299 573 - -
Sebi41g00017 619 ProSiteProfiles Protein kinase domain profile. 293 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi41g00017 619 Gene3D Phosphorylase Kinase; domain 1 277 367 - -
Sebi41g00017 619 Pfam Protein kinase domain 294 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi41g00017 619 SMART serkin_6 293 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi41g00017 619 Gene3D - 1 224 - -
Sebi41g00017 619 CDD lectin_legume_LecRK_Arcelin_ConA 5 216 IPR001220 GO:0030246
Sebi41g00017 619 Pfam Legume lectin domain 7 217 IPR001220 GO:0030246
Sebi41g00017 619 FunFam Probable L-type lectin-domain containing receptor kinase S.5 278 367 - -
Sebi41g00017 619 PANTHER - 26 581 - -
Sebi41g00017 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Sebi41g00017 619 ProSitePatterns Protein kinases ATP-binding region signature. 299 320 IPR017441 GO:0005524
Sebi41g00017 619 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 223 IPR013320 -
Sebi41g00017 619 SUPERFAMILY Protein kinase-like (PK-like) 274 571 IPR011009 -
Sebi41g00017 619 FunFam probable L-type lectin-domain containing receptor kinase S.5 368 577 - -
Sebi41g00017 619 ProSitePatterns Legume lectins beta-chain signature. 101 107 IPR019825 -
Sebi41g00017 619 Gene3D Transferase(Phosphotransferase) domain 1 368 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi41g00017 Sebi-Chr41 635666 637525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi41g00017 27 589 Receptor kinase-like Gene Family AT5G55830 38.550 2.36e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi41g00017 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi41g00017 - - qsa:O6P43_009469 912.909