Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi419g00016 ATGAGTTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAAGGACTGCAGAAGCTACGGTGGTATTGCCAGATGTGCCAGAAGCAATGCCGAGATGAGAATGGGTTTAAATGCCACTGCATGAGTGAAGGGCACCAGCGTCAAATGCAAATTTTTGGACAAAACCCAACTCGTATAATTGAGGGCTACTCTGAAGAGTTTGAGAGCACTTTTCTTGAGCACATGAAGCGCAGTCACCGGTTCAGCCGTGTGGCTGCCACTGTAGTTTATAATGAATATATAAATGATAGACACCACATTCATATGAACTCCACTCAGTGGGCTACGCTTACTGAGTTTATTAAGTATTTGGGCCGAACTGGCAAGTGTAAGGTTGAAGAAACACCCAAGGGATGGTTCATTACATACATTGATAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAAAATAAGAGAATCAAGGCAGATATGGCAGATGAAGAAAAGCAAGAGAAAGAGATTAGGAAACAGATCGAAATGGCTGAGCAATTGATGCAACTACCTAATTCTGAATCTGATCAGGTTTCACAGGCTGAGCAACCAAGGGAACTAAATGTAGAAGATGGAGTTAAGATAGGATTTTCTCTTGGGTCATCAGCTAGACCTGTGGCCAAGGAAAAACGTGGGGCATCGAAGGTGGTGTTTGATGAGGTTGATGAAGAGAAATATGAGGAAAGGAATCTTGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAACTTTGGATGAAATGATAAGGGATGAAGAGAAGAAAAAAGAAAAAATTAACAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTCTTGTTAGAGAAAGGGTACTACAAGCAAAAAGGCATTGTGCAAAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAGCTTGAAACTGTGATTCCACAAGTTGGGGGCCGTGTGAAAATAGTCAATGGGGCATATCGTGGATCACTTGCTAGGCTGCTGGGAGTGGATACTGACAATTTTTGTGCCAAGGTGCAGATAGAGAAAGGTCCCTATGATGGCAGGGTACTTAAAGCTGTGGAGTATGAGGATATTTGTAAAGTAGCCCAGTGA 1188 0.42 MSFSHLRQLPIESKQKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPTRIIEGYSEEFESTFLEHMKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFIKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMADEEKQEKEIRKQIEMAEQLMQLPNSESDQVSQAEQPRELNVEDGVKIGFSLGSSARPVAKEKRGASKVVFDEVDEEKYEERNLGNNLKRKESGGGKSTLDEMIRDEEKKKEKINRKDYWLHEGIVVKVMSKVLLEKGYYKQKGIVQKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDNFCAKVQIEKGPYDGRVLKAVEYEDICKVAQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi419g00016 395 SUPERFAMILY beta-beta-alpha zinc fingers 23 63 IPR036236 -
Sebi419g00016 395 Gene3D - 57 157 IPR038254 -
Sebi419g00016 395 Gene3D - 338 394 IPR014722 -
Sebi419g00016 395 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 12 394 IPR037321 -
Sebi419g00016 395 Coils Coil 151 183 - -
Sebi419g00016 395 Pfam Domain of Kin17 curved DNA-binding protein 49 174 IPR019447 -
Sebi419g00016 395 Gene3D - 284 337 - -
Sebi419g00016 395 FunFam DNA/RNA-binding protein KIN17, putative 58 157 - -
Sebi419g00016 395 SMART Kin17_mid_2 49 175 IPR019447 -
Sebi419g00016 395 FunFam DNA/RNA-binding protein kin17-like 284 337 - -
Sebi419g00016 395 Coils Coil 257 277 - -
Sebi419g00016 395 Pfam KN17 SH3-like C-terminal domain 276 329 IPR041330 -
Sebi419g00016 395 CDD KOW_KIN17 340 393 IPR041995 -
Sebi419g00016 395 FunFam DNA/RNA-binding protein KIN17, putative 338 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi419g00016 Sebi-Chr419 861266 862453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi419g00016 14 394 C2H2 Transcription Factor Family AT1G55460 68.000 0.0 547