Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi419g00009 ATGACAGTTGAGAGAAGATTTGTTTTGGTTGGGATTAGAATTGATAGCCATAGTAGACAACTCCTCAACTGGGCTCTTGTCAAAGTTGCTGAACCTGGGGATTGTGTTATTGCAGTCCATGTAGTTAAAAACTCAGTTTATGTTTCCAAAAACAAGAGCCTGATAGATGAGTATTTAGAGGTCTATGAAGGCCTGTGTGGTGTGAAGAAGGTTGATCTCACTGGTCAAATCTTAACAGGAAACTCCATTAGAAGCATTCTTGTTAGAGAAGCAAAAAACCATGCTGCTCTGGCCCTAGTGGTAGGGGGTCGAGCTACTATAGCTAAATATTGTGCCAAACGGCTACCACCCACCACCAATGTTCTAGCCATCAAAGATTCAAGAGTTGTCTTCAGGAGGTGCACCAATAAACAACCACCAGGTAGTCTTATAGTGGATCCAAGACCAAGTTTAACAAGCATAGAGAGCCTGAGTGAGAGAGTAACCCAGTCTGAATTTGGTGACTCTGTCTCTATGGTGGAGAGTGAGAAACCAACACCTCAAAATACCATAGATCAATTGAAGGAAGAATCATTTGATAGATTAGGAAGAAGCAAGTCAAGAAAACTGATTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAGTTCTCCCTGACGGAAAGCTAATTGCTGTTAAAGTATTGAAGTCATCAAAAGAAGCATTGAAAGATTTTGCCCTTGAGGTGGAAATAGTATCCTCATTGAAGCATAAAAACGTGGTCCCTCTACTTGGGATTTGCATAGAGGACAATACTTTAATCTCTGTTTATGATTATTTCCCCAAAGGCAGCTTAGAGGAAAATCTACATGGAAAGAACAAGGATGGATCCATCTTGTCATGGGAAGTGAGATTCAATGTAGCTGTTGGGATTGCTGAAGCCCTGGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACATAGAGATGTCAAGTCTTCAAACATTCTTCTTTCCCATGGATATGAACCACAAGTCAGTGACAAGATAGATGTCTATGCCTTTGGTGTAGTGCTTCTTGAACTAATATCAGGGAGGGAACCAATCAGTTCTGAACCTTGCAAAGGACAAGAAAGCTTGGTCGTGTGGGCAAAACCAATACTAGAGAGTGGGGATATTAAAGGCTTATTGGACCCAAATTTAGAAGGGAAGTTTGATGAGACCCAAATGCAAAGAATGGTTCTTGCAGCATCTCTATGCATCACACGGGCTGCTAGGATTCGTCCTAAAATGAACGAGATACTTAAGATCCTAAAAGGAGATGAGAAAATTGAACATTTCTTGAACTCCGAGGAGAATGATCATGGGTATTCAGGAAATGAAGAAAACATTGATGATGAAGTGTATCCAAATTCAAGTGCAGAGTTACACTTGAGTCTTGCATTACTTGGTGTTGAAGATGACAGTACATCATGTAGTAGTACAGATCACAGTTTTGTTAGTGAACACTTGAAAGAACAATGGAGCAGGTCTTCAAGTTTTAGTTAG 1527 0.4073 MTVERRFVLVGIRIDSHSRQLLNWALVKVAEPGDCVIAVHVVKNSVYVSKNKSLIDEYLEVYEGLCGVKKVDLTGQILTGNSIRSILVREAKNHAALALVVGGRATIAKYCAKRLPPTTNVLAIKDSRVVFRRCTNKQPPGSLIVDPRPSLTSIESLSERVTQSEFGDSVSMVESEKPTPQNTIDQLKEESFDRLGRSKSRKLIGKGGSNRVYKGVLPDGKLIAVKVLKSSKEALKDFALEVEIVSSLKHKNVVPLLGICIEDNTLISVYDYFPKGSLEENLHGKNKDGSILSWEVRFNVAVGIAEALDYLHREALKPVIHRDVKSSNILLSHGYEPQVSDKIDVYAFGVVLLELISGREPISSEPCKGQESLVVWAKPILESGDIKGLLDPNLEGKFDETQMQRMVLAASLCITRAARIRPKMNEILKILKGDEKIEHFLNSEENDHGYSGNEENIDDEVYPNSSAELHLSLALLGVEDDSTSCSSTDHSFVSEHLKEQWSRSSSFS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi419g00009 508 Gene3D Transferase(Phosphotransferase) domain 1 273 338 - -
Sebi419g00009 508 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 105 - -
Sebi419g00009 508 Pfam Protein kinase domain 201 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi419g00009 508 ProSiteProfiles Protein kinase domain profile. 198 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi419g00009 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 319 331 IPR008271 GO:0004672|GO:0006468
Sebi419g00009 508 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 173 272 - -
Sebi419g00009 508 Gene3D Transferase(Phosphotransferase) domain 1 339 455 - -
Sebi419g00009 508 CDD USP_Like 8 104 - -
Sebi419g00009 508 Gene3D Phosphorylase Kinase; domain 1 160 272 - -
Sebi419g00009 508 PANTHER OS08G0249100 PROTEIN 198 341 IPR046958 -
Sebi419g00009 508 SMART serkin_6 198 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi419g00009 508 SUPERFAMILY Protein kinase-like (PK-like) 199 433 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi419g00009 Sebi-Chr419 333977 337491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi419g00009 203 508 Trihelix Transcription Factor Family AT1G70460 33.621 6.94e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi419g00009 Pkinase 8.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi419g00009 - - tpra:123897148 576.244