Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi418g00044 ATGGAGCTTCGTTCTCGTCGACGCCTTTCCGGTACCAATGTTTCCGGGAAGGAGAAGCAGCCGGGGGATGCCGTTGGGGAAGTTGAAACTAATGGCCAGGGCAGCAATGATACCGATGAAGACGTTTGTAACATATCTTCAAATTCCGATTCCGATTTTGAAGATGAAGACTTTGGTGGGAACCTCCCTTTTGACTTGAATCAAGACCCGACTTCAAGCTTTTGTGCTTCTGATGGAGAAGATTATGCTTCTGATTCATCTGATGGTAGCAAGCCTTTATCTAAAAGGAGGAAGGCACGGTCCAGAAAGAAAAGAAACAAGCTCAACATGAACAGTGAAGAACTGAGTGATGTAGAAGGAATGATGGAGGATGAGGTTGAGGAATGTTCAGTGGTTTTCAATCAAGAAGTTCCCATCAATTTGACAAAGGTGCCAAAGAAGAGAAAAGCAAGAAAAACAAGAAAGGGAAATTCTCGGCCAGTGTTATTATGGAATGCTTGGGAAGAGGAGCAAAAGAGATGGATTGATCAGAATTTGTCAGAAGATGTTAACTTAGATAATCACAGTGAAGTGATGAATGAAACCGCTGAGGCATCCTCAGATCTGACTATGCCTTTGCTACGTTACCAGAGGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGACACTAGAGGAGGAATCCTTGCTGATGAAATGGGAATGGGAAAGACTATTCAAGCAATTGCCCTCGTCCTTGCCAAACGTGAATTTCATCAAATGAGTTGTGAACCAGATGCACCCTCACCTTCACCAGGGTCACCAGGGCCATCTAGAGTCTTGCCTGCAATCAAAGGAACACTTGTCATTTGTCCTGTGGTTGCAGTTACTCAGTGGGTTAGTGAGATTGATCGATTTACTTTGAAAGGAAGTGCCAAGGTGCTGGTTTATCATGGGGCAAAGAGAGGGAAGAGTGTTGAACAGTTCTCAGAAGGTATTTTTGTGGGCCTTATGCTATTAGAACTGAAAAAACAATCAAAACAAACTAAGAAAAAGAAAACAGAAGTAACTAAACAGAAGATCAAAGTCCCAAAGCGTGGGAATGGAGAGTTGGAGCAGGGTGAAGAGGAAATGCGCTCCAGAGTAGAAGACTCAGACACAATAGGCAGAGAGACGTCATTTCTACATGCTGTAAAGTGGCAAAGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGCAACACTGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAGATGGGCATTAAGTGGCACACCCCTTCAGAACCGTGTTGGAGAGCTATATTCTCTGGTACGGTTTCTGCAAATAGTTCCTTATTCCTATTACTTGTGCAAGGATTGTGATTGCAGGGTACTTGATCATAGCTCCTCTAAACAATGTTCAAACTGCTCCCACAGTTCTGTTAGACATTTTTGTTGGTGGAACAAATATATAGCAACACCAATTCAATCACATGGATATGGCGATTCTGGAAGAAGAGCCATGATATTGCTTAAACACAAAATTTTAAGGAACATAGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTACCGCCTAGAATTGTTTCATTGAGGAAGGATAGCCTAGATATAAAAGAGCACGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAGTTTAATACATATGTCGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGACTTCGTCAGGCTGTTGACCATCCATATCTTGTGGTATATTCTCCAACTGCAGCATTAAAAGGAGGGAACTTGGCTAGTACTGGCAATGTTGAACAAGCATGTGGCCTTTGTCATGAGGCAGTTGAAGATCCTGTGGTTACCGCATGTGAGCATATTTTTTGCAAGGGATGTTTGATAGACTTTTCTGCTTCCTTGGGACGAATATCATGCCCCTCATGCTCTAAATTACTTACAGTTGATCTAACTTCCAACAAAGATGGTGCAGTTCAGGCTAATAATAAAACAACTATTAAAGGTTTCAGATCCTCAAGCATTTTAAATAGAATTCAGCTTGAGAACTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGATTGAAAGGGATGGTTCTGCCAAGGGGATCGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATTAACTACTCCCTGCACAAGTCAGGTGTGTCTTGCGTTCAATTGAATGGGAGCATGACCTTGGCTGCTCGGGATGCTGCTATTAAGAGATTTACTGATGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGAGGTGTTGCTCTCAATTTGACAGTAGCATCACATGTTTTCCTTATGGACCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTCATTGAAAACACAATAGAGGAGAGGATCTTGAAACTTCAAGAGAAGAAGGAACTGGTATTTGAAGGGACTGTAGGCGGCTCTTCTGAGGCTCTGGGGAAATTGACGGAGGCTGACTTGAAATTTCTCTTTGTCACCTAA 2628 0.4209 MELRSRRRLSGTNVSGKEKQPGDAVGEVETNGQGSNDTDEDVCNISSNSDSDFEDEDFGGNLPFDLNQDPTSSFCASDGEDYASDSSDGSKPLSKRRKARSRKKRNKLNMNSEELSDVEGMMEDEVEECSVVFNQEVPINLTKVPKKRKARKTRKGNSRPVLLWNAWEEEQKRWIDQNLSEDVNLDNHSEVMNETAEASSDLTMPLLRYQREWLAWALKQENSDTRGGILADEMGMGKTIQAIALVLAKREFHQMSCEPDAPSPSPGSPGPSRVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSAKVLVYHGAKRGKSVEQFSEGIFVGLMLLELKKQSKQTKKKKTEVTKQKIKVPKRGNGELEQGEEEMRSRVEDSDTIGRETSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRVLDHSSSKQCSNCSHSSVRHFCWWNKYIATPIQSHGYGDSGRRAMILLKHKILRNIVLRRTKIGRAADLALPPRIVSLRKDSLDIKEHDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPTAALKGGNLASTGNVEQACGLCHEAVEDPVVTACEHIFCKGCLIDFSASLGRISCPSCSKLLTVDLTSNKDGAVQANNKTTIKGFRSSSILNRIQLENFQTSTKIEALREEIRFMIERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMTLAARDAAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTEADLKFLFVT 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi418g00044 875 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 57 873 - -
Sebi418g00044 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 873 IPR027417 -
Sebi418g00044 875 Coils Coil 692 712 - -
Sebi418g00044 875 CDD DEXDc_SHPRH-like 206 522 - -
Sebi418g00044 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 694 IPR013083 -
Sebi418g00044 875 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 701 865 IPR001650 -
Sebi418g00044 875 ProSiteProfiles Zinc finger RING-type profile. 620 660 IPR001841 -
Sebi418g00044 875 Pfam Helicase conserved C-terminal domain 705 819 IPR001650 -
Sebi418g00044 875 MobiDBLite consensus disorder prediction 29 49 - -
Sebi418g00044 875 SMART ultradead3 202 454 IPR014001 -
Sebi418g00044 875 Coils Coil 333 353 - -
Sebi418g00044 875 SMART helicmild6 736 819 IPR001650 -
Sebi418g00044 875 ProSitePatterns Zinc finger RING-type signature. 635 644 IPR017907 -
Sebi418g00044 875 CDD SF2_C_SNF 703 830 - -
Sebi418g00044 875 SMART ring_2 620 659 IPR001841 -
Sebi418g00044 875 Pfam SNF2-related domain 220 597 IPR000330 GO:0005524|GO:0140658
Sebi418g00044 875 SUPERFAMILY RING/U-box 617 664 - -
Sebi418g00044 875 MobiDBLite consensus disorder prediction 357 379 - -
Sebi418g00044 875 Pfam Zinc finger, C3HC4 type (RING finger) 620 659 IPR018957 GO:0046872
Sebi418g00044 875 MobiDBLite consensus disorder prediction 65 80 - -
Sebi418g00044 875 Gene3D - 543 873 IPR027417 -
Sebi418g00044 875 Gene3D - 176 542 IPR038718 -
Sebi418g00044 875 MobiDBLite consensus disorder prediction 1 119 - -
Sebi418g00044 875 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 449 IPR014001 -
Sebi418g00044 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 522 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi418g00044 Sebi-Chr418 861034 869644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi418g00044 116 875 RAD5 or RAD16-like Gene Family AT1G05120 61.132 0.0 998
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi418g00044 SNF2_N 2.8e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi418g00044 K15083 - gmx:100786366 1227.62