Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi418g00021 ATGTTTAACGGTATGATGGATCCTGAATTGATCAGGATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAATTGGCTCGGATCCAACAACAGATGATGTCTAACCCAGAGCTGATGAGGATGGCCTCTGAAAGCATGAAGAACATGAACTCTGAAGACTTCAAACTTGCTGCTGAACAGTTAAAGCATACCCGTCCCGAAGAAATGGCTGAGATCAGTCAGAAGATGGCTAATGCAACACCTGATGAAGTAGCAGCTATGCGTGCCCGTGTTGATGCTCAGATCAAATATCAATTGAATGCAGCTGAGATGTTGAAGAAGCAGGGAAATGAACTTCACAATCAAGGAAGGTTCAATGATGCTTTGGAGAAGTATATGCGCGCTAAGGAAAACATTAAAGACATTCCATCTTCTCAAAGTAGAAAGCTCCTTTTGGCGTGCTCACTAAACTTGATGTCCTGTTACTTGAAGACAAAGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCAAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCTTCTTAAGGATGCTGTTACTGATTTGAGCAAGGCCCTTGAAGTTTCCCCTGATGATGATACAATTGCAGAGCTTTTACGGGACACTGAGGAAAAGTTGAGTAAGGGCAATGGTGATTGTGGACCTGGAAGATTAGTAATTGAGGAAATAACTGAAGAAGACGAGAATGTGCCTTCTGGAAACAATAGAAGCTCTTCTTTGGAACAAACAGTGGTTCAACCAAAAAAATCTGGTAACTCCTCTAAGAGTTACAGTATAGCTAACAATGGAAATCCAAAAACAAATGCAGACAGTTTAGATACATTGAAAAAAGATCCAGAAGCTCTCAGGTCATTCCAAAACTTCATTTCAAATGCCGATCCTGCCACTCTGGCTTCTTTGAACACTGGACATCCCCAAGATGTGTCCCCAGATATGATTAAAGCTACCTCAGATATGATTGGCAAGATGTCACCTGAGGAACTTCAAAAAATGCTTGACATGGCATCTTCATTTCAAGGGGACAACCCATTTTTCAGAGGAGGTTCCCCTGATTCTCCTTTCAACTCTGGATCAATTCCTCCTAACGTGACACCTGACATGTTTAAAACAGCGAGTGATATGATAAGTAAAATGCCAGCAGATGAGCTTAAGAAGATGTTTGAAATGGCATCCTCACTGAAAGGGAAAGAATCGTTTCCATCAACAGCAACCGTAGACAAGAATGAAAGAAATATTTCCCAGTCAAATTTCCCATCCTCAAGTACCAGTGGAACTCATGCTTTTGGAGAATCAAGTTCTTCTCACAATGCATTTTCAAATATGAGAAATGCTTCTCAGTCAAACTTCCCTTCCTCAAGTACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGCAGATGTTCACATCAATGGTTAAAAATATGAGTCCGGAAATGATGGCAAACATGGGAGAACAATTTGGTTTCAAGCTTTCACCCGAAGACGCAGCAAAAGCTCAGCAAGCCATGTCATCCTTGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCGGACAGAATTCAAAGAGGAGTGGAAGGTGTTAAAAAGACAAAGAACTGGCTGCTAGGGAAACCAGGCATGGTCTTTGCAATATGCATGCTCATCTTGGCTATAATTCTTCACCGGTTGGGCTTCATTGGTGGCTAG 1767 0.4188 MFNGMMDPELIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMNSEDFKLAAEQLKHTRPEEMAEISQKMANATPDEVAAMRARVDAQIKYQLNAAEMLKKQGNELHNQGRFNDALEKYMRAKENIKDIPSSQSRKLLLACSLNLMSCYLKTKQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLKDAVTDLSKALEVSPDDDTIAELLRDTEEKLSKGNGDCGPGRLVIEEITEEDENVPSGNNRSSSLEQTVVQPKKSGNSSKSYSIANNGNPKTNADSLDTLKKDPEALRSFQNFISNADPATLASLNTGHPQDVSPDMIKATSDMIGKMSPEELQKMLDMASSFQGDNPFFRGGSPDSPFNSGSIPPNVTPDMFKTASDMISKMPADELKKMFEMASSLKGKESFPSTATVDKNERNISQSNFPSSSTSGTHAFGESSSSHNAFSNMRNASQSNFPSSSTDLQEQMRNQMKDPAMRQMFTSMVKNMSPEMMANMGEQFGFKLSPEDAAKAQQAMSSLSPESLDKMMLWADRIQRGVEGVKKTKNWLLGKPGMVFAICMLILAIILHRLGFIGG 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi418g00021 588 MobiDBLite consensus disorder prediction 414 480 - -
Sebi418g00021 588 MobiDBLite consensus disorder prediction 251 291 - -
Sebi418g00021 588 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Sebi418g00021 588 MobiDBLite consensus disorder prediction 245 294 - -
Sebi418g00021 588 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Sebi418g00021 588 SUPERFAMILY TPR-like 95 228 IPR011990 GO:0005515
Sebi418g00021 588 MobiDBLite consensus disorder prediction 416 480 - -
Sebi418g00021 588 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 363 - -
Sebi418g00021 588 SMART tpr_5 103 136 IPR019734 GO:0005515
Sebi418g00021 588 SMART tpr_5 180 213 IPR019734 GO:0005515
Sebi418g00021 588 SMART tpr_5 146 179 IPR019734 GO:0005515
Sebi418g00021 588 Gene3D Tetratricopeptide repeat domain 89 233 IPR011990 GO:0005515
Sebi418g00021 588 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi418g00021 Sebi-Chr418 441123 446014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi418g00021 99 231 Calmodulin-binding Proteins AT5G48570 34.532 4.11e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi418g00021 - - gmx:100800315 989.564