Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi418g00016 ATGACTCTGGCTCGAGGCTTTGCCATTGTCTTCCTTTTGTTTGCTTTGTATTGTGGGTTGGACCCATTTCAGCATAGCCCCATCGCGAACTTTCCTGATTTTGAGGCCAAAAAGGTTGACATGCCCGCATGGTCTCAGGTTCCAACCGACCAAGATAAAGAGAACTTGTTACAAAAATCGGAGATTAAGTTTCTGAACCAAGTACAGGGACCAGAGAGCATTGCCTTCGACCCTCTTGGTCGTGGCCCTTACACTGGTCTCGCTGATGGAAGGATTTTGTTCTGGAATGGACAATCTTGGGTTGATTTTGCTTATACCTCGCCCAACAGGTCAGAGCTATGCAATCCTATAGCATCTGCAACACCATTTAGTTATGTGAGGACTGAGCATATCTGTGGGAGGCCTTTGGGACTCAGGTTTGACAAGAAAACAGGTGATTTGTACATTGCAGATGCATATTTTGGGCTGATGAAGGTGGGGCCTGAGGGTGGGACAGCAACATCTCTTGCAACTGAGGCTGAAGGGGTGCCGCTGAGATTTACTAATGATGTTGACATTGATACAGAAGGGAATGTTTATTTTACAGAAAGCAGTGCTAATTATCCGAGGAGGAATTTCATTCAGCTAGTATTTTCTGGGGATGATTCTGGCAAGGTTTTGAAATACAACCCTGCCACTAAGGAAACCACTGTTCTTGTAAGGAACGTTCAATTTCCAAATGGCATTTCCTTAAGCAAGGATGGATCCTTCTTTGTCTTTTGTGAAGGGGCTATTGGCAGGTTACGTAAATACTGGCTGAAAGGAGATAAAGCTGGGACTTCAGAGGTCTTAGCCATCCTACCTGGATTTCCTGACAATGTGAGAGTCAATGAAAATGGTGATTTTTGGGTTGCTATTCATTGCAGAAGGTATATGTATTCATACCTTAATGGTCTCTATCCAAAGATAAGGAAAGTCATACTCAAGCTTCCTATACCAACAAAGTATCAATACCTGCTTCAAATTGGAGGATGGCAACATGCAGTAATTGTGAAGTATAGTCCTGAAGGTAAACTTTTGCAGATATTGGAGGATAGTCAGGGGAAGGTTGTTAGAGCAGTGAGTGAAGTGGAGGAGAAGGATGTCACAAGTGTGCTTGAAACTCAAATGTCGTATTTGGTTGTACCTAGAAACACTAGTGATATAAGAAAGTGGTTCATGAAATCACATGACAAGGGCAACAATGCCGGTGTCTCGAAGCCTTCCAGTCAACCGAAGCCTTCTCCGGATAAACCCAACCCGGAGAAAAACGGTGCCTGGAGGTCAAGAAGTTCAGGGAGGAGGAAAACTAGCAAATATTTTAATACAGATAAGCAAAAGCCGAAAGATGAGAAAGAAACACTGGAGCTCCCTGCTAAAAGAAAGAATATGAAGGACAACGAGGAATTACTGGAGCCCTGTGATGATGGAGATGACTCTGTCTTGCCTGCTCATAAAAAGAAGTTAGCTGAGTCCACACCAACAAAAAAATTGAAGAGTGGATCAGGGGTCGTGGTGGAAGAGGAGCACCGACCCAATCAACTGGTGGGAGAGGCAGAGGGGGGTGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAAATGGTTTAACTTTTGTAATCAGTGGAACGCTGGACAGTTTGGAGCGAGAAGAAGCAGAAGATTTAATTAAACGTCATGGTGGTCGTGTCACTGGATCAATCAGCAAGAAAACAAATTATTTGTTATGTGATGAAGATATTGGGGGACGGAAGTCTTCAAAAGCTAAAGAGCTAGGAACTTCATTCCTCACAGAGGATAGGTTGTTTGATATGATTCGCGCATCAAAACCTGCAAAAGCTCAAGAAGAATGCAAGAAATCTGCGAATAAGGCTGTTGCAGTAGCATCCCAATCAAAGGTCCTCCAAAAGTGGAAACAAAGGCAGCTCTTAGAGTTAAGTTGTTACAATCAAGGGTGTTTGTTTATTTATGTTCTGAGTTGCATTCCTTTATCAACAAATGCAGTCTCTATATCTTCACGTTCACCTTCCAACCAAACTAAACGGAAGACAGCAACTACTGCTCAGTCTTCTTTGATGTGGACAGAGAAACATCGACCTACAGATCCAAAGAATATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGAAATTGGTTGAAACTTGGCATGGGCAATTTTTGGACACTGGAAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAATTCAAATTCTATCAAGGAACTTGTAACCAATGAGGCTCTTAGCACTGATATGGATCGGTCAAAGCATTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGACAGGGGTGGTATTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGCTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTTAGTTTTCGGAAGCCTACAAAGCAACAGATGGCTAAGAAGTTGATGGATGTTGCAAAGGCTGAAGGGCTTCAAGTGAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCACTAAACCAGTTACACTATATGAGCCTCTCCATGTCAGTTATCAACTATGATGATATTAGGCAGCGCTTCCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGATTTTTGGTTTTAACGGTGGAAAGTTGAAAATGGATGAAAGAATTAGTCTTAGCATGAGTGATCCAGATCTTGTTCCTCTTCTTATCCAGTGCTATAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAACGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCATCATGTATAATTCCTGCTTCATTGTTGCATGGGCAAAGGGAAATACTTGAACAGGGAGAACGGAATTTTAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCAACAATGGGAAAAAACATGAGGCTTTTGGATGATCTGCATGTTCACATTCTTGCATCTCGGGAATCTAGTTCAGGAAGAGATACTATTCGCTTGGAATACCTTACTCTTCTCCTTAGACAGTTGACAGAACCTCTACGAGTCCTGCCTAAGGTTGAAGCTGTTCAGAAAGTTGTGGAATTTATGAATACATACTCAATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGCCATCCTAATCCGCTAGATGGCATACAACCTGCTGTTAAGTCAGCCTTGACAAAAGCCTACAAAGAGCAAAGCAAATCTCGGATGGTTCGAGCTGCAGATCTGGTCACTCTTCCTGGTATAAAAAAGGTCCCTAAGAAGCGGATTGCTGCTATTCTGGAACCAGCTGATGAAGGAGTAGAACAAGGTGATGGTGACACTTTGGGCGAGAGTGAAGAAGAGAACACCTCTGACACAGAGGATTTGGAAGGCACCACCACTGGCGAGAAGCTGAAGTCCGAACTACAAAGTTTGAATTCAAAGGCTATGCAAGTACAATTGGAGTTGAAGGGAACGGGAAATTCAAGTTCCAAAAAGACATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGTGCAGAAGGATGCTCAAACTTCAAGGGCTACTGCAAAAAGAAAGAGGTGA 3876 0.4293 MTLARGFAIVFLLFALYCGLDPFQHSPIANFPDFEAKKVDMPAWSQVPTDQDKENLLQKSEIKFLNQVQGPESIAFDPLGRGPYTGLADGRILFWNGQSWVDFAYTSPNRSELCNPIASATPFSYVRTEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGTATSLATEAEGVPLRFTNDVDIDTEGNVYFTESSANYPRRNFIQLVFSGDDSGKVLKYNPATKETTVLVRNVQFPNGISLSKDGSFFVFCEGAIGRLRKYWLKGDKAGTSEVLAILPGFPDNVRVNENGDFWVAIHCRRYMYSYLNGLYPKIRKVILKLPIPTKYQYLLQIGGWQHAVIVKYSPEGKLLQILEDSQGKVVRAVSEVEEKDVTSVLETQMSYLVVPRNTSDIRKWFMKSHDKGNNAGVSKPSSQPKPSPDKPNPEKNGAWRSRSSGRRKTSKYFNTDKQKPKDEKETLELPAKRKNMKDNEELLEPCDDGDDSVLPAHKKKLAESTPTKKLKSGSGVVVEEEHRPNQLVGEAEGGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLNGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTNYLLCDEDIGGRKSSKAKELGTSFLTEDRLFDMIRASKPAKAQEECKKSANKAVAVASQSKVLQKWKQRQLLELSCYNQGCLFIYVLSCIPLSTNAVSISSRSPSNQTKRKTATTAQSSLMWTEKHRPTDPKNIIGNQSLVSQLRNWLKLGMGNFWTLEKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNSNSIKELVTNEALSTDMDRSKHSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKKLMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDKIFGFNGGKLKMDERISLSMSDPDLVPLLIQCYKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNMRLLDDLHVHILASRESSSGRDTIRLEYLTLLLRQLTEPLRVLPKVEAVQKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQSKSRMVRAADLVTLPGIKKVPKKRIAAILEPADEGVEQGDGDTLGESEEENTSDTEDLEGTTTGEKLKSELQSLNSKAMQVQLELKGTGNSSSKKTSGGRGKGASASVQKDAQTSRATAKRKR 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi418g00016 1291 MobiDBLite consensus disorder prediction 1203 1224 - -
Sebi418g00016 1291 MobiDBLite consensus disorder prediction 695 715 - -
Sebi418g00016 1291 MobiDBLite consensus disorder prediction 1233 1282 - -
Sebi418g00016 1291 MobiDBLite consensus disorder prediction 403 515 - -
Sebi418g00016 1291 Pfam Strictosidine synthase 182 268 IPR018119 GO:0009058|GO:0016844
Sebi418g00016 1291 MobiDBLite consensus disorder prediction 484 500 - -
Sebi418g00016 1291 Gene3D - 54 397 IPR011042 -
Sebi418g00016 1291 MobiDBLite consensus disorder prediction 443 476 - -
Sebi418g00016 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 940 IPR027417 -
Sebi418g00016 1291 ProSiteProfiles BRCT domain profile. 554 635 IPR001357 -
Sebi418g00016 1291 CDD HLD_clamp_RFC 880 938 - -
Sebi418g00016 1291 Pfam ATPase family associated with various cellular activities (AAA) 757 835 IPR003959 GO:0005524|GO:0016887
Sebi418g00016 1291 CDD BRCT_RFC1 554 632 - -
Sebi418g00016 1291 MobiDBLite consensus disorder prediction 1197 1291 - -
Sebi418g00016 1291 Gene3D BRCT domain 531 633 IPR036420 -
Sebi418g00016 1291 FunFam Putative strictosidine synthase 54 389 - -
Sebi418g00016 1291 Pfam BRCA1 C Terminus (BRCT) domain 556 631 IPR001357 -
Sebi418g00016 1291 SUPERFAMILY BRCT domain 554 636 IPR036420 -
Sebi418g00016 1291 Gene3D - 880 950 - -
Sebi418g00016 1291 FunFam Replication factor C subunit 1 530 633 - -
Sebi418g00016 1291 Gene3D - 755 879 IPR027417 -
Sebi418g00016 1291 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 757 1262 - -
Sebi418g00016 1291 FunFam Replication factor C subunit 1 880 951 - -
Sebi418g00016 1291 SUPERFAMILY post-AAA+ oligomerization domain-like 951 1080 IPR008921 GO:0003677|GO:0006260
Sebi418g00016 1291 Pfam Replication factor RFC1 C terminal domain 1004 1166 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Sebi418g00016 1291 Coils Coil 1232 1252 - -
Sebi418g00016 1291 Pfam Strictosidine synthase-like, N-terminal 58 94 - -
Sebi418g00016 1291 SMART BRCT_7 556 634 IPR001357 -
Sebi418g00016 1291 Gene3D - 952 1045 - -
Sebi418g00016 1291 SUPERFAMILY Calcium-dependent phosphotriesterase 55 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi418g00016 Sebi-Chr418 271280 292077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi418g00016 393 1246 Core DNA Replication Machinery Family AT5G22010 60.149 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi418g00016 K10754 - gmx:100790070 1269.22