Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi418g00015 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATTCAGCAGTTTACTAACCATAGTGACAGTTAGATGTGGTCATTGTGCCAATTTGCTATCAGTTAACATGGGAGCTTCACTTCAAGCATTTCCTCCTCAAGACCCTCAGTCACAGAAACAGCACCTAAGCTTTGAAGAATCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAACAAACTAGCGGCATTTGAGGCAATAGATCAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTGCGGAGAAGAGACATCGTGTTCCTTCTGCTTATAACCGCTTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCATAGAGAGGCTTTCAGCGCGGCAGCCAAAAACAATCTACTAGCATACAAACCTCCCATTTGTGAGAGACACGTGGGGTTTCATGTTTTAATGATGATATGA 516 0.4322 MSMDMMATERVCYVHCNFCNTILAVSVPFSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQSQKQHLSFEESSSKELGSSSKCNKLAAFEAIDQHEQPRIPPIRPAEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSAAAKNNLLAYKPPICERHVGFHVLMMI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi418g00015 171 MobiDBLite consensus disorder prediction 58 84 - -
Sebi418g00015 171 Pfam YABBY protein 7 149 IPR006780 GO:0007275
Sebi418g00015 171 CDD HMG-box_SF 114 148 - -
Sebi418g00015 171 SUPERFAMILY HMG-box 106 147 IPR036910 -
Sebi418g00015 171 PANTHER PROTEIN YABBY 6-RELATED 1 158 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi418g00015 Sebi-Chr418 242989 253528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi418g00015 1 149 C2C2-YABBY Transcription Factor Family AT1G08465 64.052 2.28e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Sebi418g00015 YABBY 7.9e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi418g00015 K25796 - gmx:100500091 260.381