Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi418g00002 ATGCCTGAAGCGGCTGCTGATGGTGCAGTTGTTTTGGGAAACCCAGTTGCTCCCCCTGTAAATGGAGACATGTATACTGATATCAGCACTGAAAATGCCATGCTTCAGGGATCTAGGAGAACTAGCAAAGGAGTCGAGTATCTGGTTGAAGCATCTGCTGCAGAAGCTGAAGCTATCAGTGCCACACTGGCTGCTGCCAAGGCACGACAAGAGAATGGAGAAGTTGAATTGCCTGACCGAGACCGCGGGGCTGAGGCTACCCCTAGTGGGAAACAAATATCTTCATTGGTTAAGCCTGATTCTGCTGTGTCAAATAGCATTGCTTCTGGTGGAGTTAGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGTGCACTAGGTGGCATGGTTAGACAGCTTTCAATTGATCAGTTTGAAAATGAAGGTAGGAGGGTCAGTTATGGGACTCCAGAAAGTGCAACTGCTGCTAGAAAATTATTGGATCGACAAATGTCTATCAATAGTGTCCCAAAGAAGGTAATAGCACACCTCTTAAAGCCTCGTGGCTGGAAACCACCAGTTCGCCGGCAGTTTTTCTTGGATTGCAATGAAATTGCAGATCTTTGTGATAGTGCAGAGAGGATATTTTCAAGTGAACCAACCGTCATACAGCTTAGGGCACCGATTAAAATATTTGGTGATTTACATGGGCAGTTCGGGGATCTCATGCGCCTCTTTGATGAGTATGGTGCACCTTCAACTGCCGGTGACATAGCATACATCGACTATCTATTCCTAGGAGATTATGTTGATAGGGGTCAACACAGCCTGGAAACTATAAGCCTTCTGCTTGCTCTGAAGGTTGAGTATCCGAACAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATCAATGCCCTTTTTGGTTTTCGAATTGAGTGCATCGAGAGGATGGGTGAGAGAGATGGGATTTGGGCATGGCACCGGATAAACCGTCTGTTTAATTGGCTTCCTCTGGCGGCTCTAATTGAGAAAAAGATTATTTGCATGCATGGGGGCATTGGTCGTTCAATAAATCATTTGGAACAAATTGAGAATATTCAGCGTCCAATTACGATGGAAGCAGGATCAATTGTGCTTATGGATCTATTGTGGTCTGATCCCACAGAGAATGACAGTGTGGAAGGGCTACGGCCCAATGCTAGAGGTCCTGGAGCATCAAGTTATGTACTGCATCCTGATCGTGTCATGGAATTTTGCAACAACAATGATCTCCAGCTGATTGTTCGTGCGCATGAATGTGTGATGGATGGCTTTGAGCGTTTTGCCCAGGGACATTTGATCACCCTCTTCTCAGCTACAAATTACTGTGGTACTGCAAATAATGCTGGGGCAATATTAGTTTTGGGTAGAGATCTTGTTGTGGTTCCGAAACTGATTCACCCGTTACCACCTGCAATTTCTTCACCAGAAACGTCACCAGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCACCAACACCAACAAGAGGCCGTCCTCAAGTAACAAATGACCGAGCTTGTGATCTTAATACCCGCAGAAGGCTTGAAGGCTTTCTTAGTCCTGGTTCTTACCACTCAAGCAAAAGGCCTTTAGAAGATACACGTTCGAGAAGATTGGTAGCAATTGCTAGGTTCACTTTGACAAAGCTAGAAGTTGCAGTCTGGGTTCCACCCACCCATTGTAAATTGAGCCATAGAATTTTGTATTTTGCCTTGTACTCCAAAGAGCTTGGGGAATTTAATTTGGTTCTCCATGTTCTATTCCCTCCAATCCAGTGGTATGGCTGTTGCTGGGACTGA 1854 0.4531 MPEAAADGAVVLGNPVAPPVNGDMYTDISTENAMLQGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQENGEVELPDRDRGAEATPSGKQISSLVKPDSAVSNSIASGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPTVIQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGASSYVLHPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVTNDRACDLNTRRRLEGFLSPGSYHSSKRPLEDTRSRRLVAIARFTLTKLEVAVWVPPTHCKLSHRILYFALYSKELGEFNLVLHVLFPPIQWYGCCWD 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi418g00002 617 SMART pp2a_7 196 482 IPR006186 GO:0016787
Sebi418g00002 617 ProSitePatterns Serine/threonine specific protein phosphatases signature. 293 298 IPR006186 GO:0016787
Sebi418g00002 617 Pfam Calcineurin-like phosphoesterase 224 433 IPR004843 GO:0016787
Sebi418g00002 617 CDD MPP_Bsu1_C 176 480 IPR041758 -
Sebi418g00002 617 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 4 524 - -
Sebi418g00002 617 PRINTS Serine/threonine phosphatase family signature 292 316 IPR006186 GO:0016787
Sebi418g00002 617 PRINTS Serine/threonine phosphatase family signature 224 251 IPR006186 GO:0016787
Sebi418g00002 617 PRINTS Serine/threonine phosphatase family signature 259 286 IPR006186 GO:0016787
Sebi418g00002 617 PRINTS Serine/threonine phosphatase family signature 444 460 IPR006186 GO:0016787
Sebi418g00002 617 PRINTS Serine/threonine phosphatase family signature 422 442 IPR006186 GO:0016787
Sebi418g00002 617 PRINTS Serine/threonine phosphatase family signature 330 356 IPR006186 GO:0016787
Sebi418g00002 617 PRINTS Serine/threonine phosphatase family signature 360 387 IPR006186 GO:0016787
Sebi418g00002 617 MobiDBLite consensus disorder prediction 70 98 - -
Sebi418g00002 617 FunFam Serine/threonine-protein phosphatase 160 502 - -
Sebi418g00002 617 Gene3D - 158 505 IPR029052 -
Sebi418g00002 617 SUPERFAMILY Metallo-dependent phosphatases 181 489 IPR029052 -
Sebi418g00002 617 MobiDBLite consensus disorder prediction 1 24 - -
Sebi418g00002 617 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi418g00002 Sebi-Chr418 29396 35113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi418g00002 188 425 Calmodulin-binding Proteins AT5G63870 28.467 2.79e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi418g00002 - - lja:Lj3g3v2928410.1 985.711