Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi416g00012 ATGCCAGCATTAATTTTGGATGAGAAGGAGAAAATGTTTTCAAAGTTTTTATCTAGTAATGGGCTGATTGATGATCCATTGGCTATTGAGAAAGAAAGGGCTATGATCAACCCTTGGACATCAGAAGAGAGAGAGATCTTCTTGGAGAAATTTGCAGCCTTTGGAAAAGATTTTCGGAAAATTGCATCTTTCCTTGACCACAAGACAACGGCTGACTGTATTGAGTTCTACTACAAAAATCACAAGTCTGATTGTTTTGAGAAAATTAAGAAAAAAGATGGTGGTAAACTACGGAAGTTGTTTACAACCAAAACTGACTTGATGGCATCAGGTAAAAAATGGAAACCTGATATGAATGCTTCTTCACTTGAGATTTTAAGTGCAGCTTCAGTGATGGCAGGTGGCATTACAGGTAACCGAAAAATGCGCTCAGGAAGTTCCATTTGGAGTGGATATGGTGATTTAAAAACATCAAGGGGTGAGGATAGCATCGCAGAGAGATTAAGTGGTTTTGATGTTCTTCAAGATGAAAGAGAGACTGTTGCAGCTGATGTATTGGCTGGTATATGTGGTTCTCTTCCATCTGAGGTTATGAGTTCATGCATAAACAGTTCAGTTGAGCCTGTGGAAGGTAACAGGGATATGAAAGTGAGATCTCTATGCAAACAATCTGTGGTGCCTGATGTTACTCAGAATATTGACGATGGAACTTGTTCTGATGAGAGCTGTGGTGAAATGGATCCTACTGATTGGACAGATGGGGAGAAGGCAGCCTTTATTCAGGCTGTATCATCTTTTGGAAAGGATTTCATGATGATTGCACGGTGTGTTGGAACAAGGTCCCGAGATCAGTGCAAAGTGTTTTTCAGCAAGGCTCGTAAATGCCTTGGATTGGATCTTGTGCACCCCAGACCTGAAAATATTGGATCACTAGTGAATGATGATGGAAATGGTGGCAGGAGCGACCCAGATGATGCATGCGTTCTAGAGAAAGGTTCAGTTATTGAGTCTGATATGTCAGGTGCTAAAACAGATGAGGACCTGCCTCCATCTGTCATGAACACATACCATGATGAATCCAGAGCCATGGAGGCTAGGGACCTGTCAGCTGACTTAAATGAATCAAAAAAAATGGGAGGTGCAGTTACAGAATTGGTGTCTGCTTCAGACATAATTGAACCATGCTACACTAATCCTGTTGCTGATAGACTGGTTTCTGAGGTTTCTTCTGGGTGTCGTGGAAATGAATTTGAGGGTTCAGATATCCGTCTCGTTGACAGAGATGATATACTTGAAGCTGATACAGATGTTGTAGTTGAATTGAAACACCAAGCCTACCATTCAAGCACTCTAGTAAATACTTCAGTATCATCTGTAGGCATTTCTTGTTCAAGATTGAGTTTTGATGCTGAAAACCAGCCCCAATTCTGTCTTGATGGAAAGCCTCATTTATCAGGACCATTGGAGGATCCTCCTCCGACTGCAAATCCAATGTTGCAAAATACTGCTGGTGCTACTGTACAACATGAAAAAACAGCTAGCCAAAATCCACTGTCTTCTACTTGTGATTTTCATGGAAGTAAAGATATCAGTGGTCATAGTTCCAGTAGTAATGGTGGCTGTCAGCTTCATAATCCTGGGAATCTATTAGACAATGTTGAGGCTGCTAGAATCCTTCAGTGCAATCCTTTGCAAGTGCCTGTTAAGGAAGTGAATGCAGATATAAGATTCAGAAAAACATCAAGAAATGGTGATTTGAAACTGTTTGGGAAGATCCTAACCAATCCTTCATCAACCCAGAATCCTACTTTAACTGCCCAGGGAAACGAAGAAAATGGTACCCATCATCCGAAGTTAAGCAGCACCTCTTCTAGTCTAAAATTTACTGGCTGTCACAATGCTAACAGAAAATCTACTATTTTGAAGTTTGATCATAATGATAACCAGGGCCTTGAAAATGTTCCCATCATGAGTTATTGGGATGGGAGCAGAAAACAGCCTGGTTTATTATCATCACTACCTGATTCTGCCATTGTGCTTGCAAAATATCCTGATGCATTTAGTAATTATCCTACATCTTCCAAATTAGAGCAACAGTCATTGCAGATGTTGGCCAAGAATGAACAACACCTGAATGGAGTATCTGCTTTTACAACTACAGAAGTCAACGGAAGCAATGGTGTCATTGATTATCAGGTGTTTAGAAATAGGGATGGTCTGAAAGTGCAGCCATTTCTGGTAGATGTTAAGGATCACCAAGATGTGTTCTCTGAGACGCAGAGAATAAATGGTTTTGAAGCAATCTCAAGTTTACAGCAGCAGGGTAGGGGAATGGTGGGACTGAATGGTGTTGGGAGATCAGGGATTCTTGTGGGAGGATCAGGCGCCGGAGTCTCGGATCCTGTGGCTGCCATCAAAATGCATTTTTCCAATGCTGACCAATATGGCAGTCAGACTGGGAGTATCATGAGAGGATGA 2478 0.414 MPALILDEKEKMFSKFLSSNGLIDDPLAIEKERAMINPWTSEEREIFLEKFAAFGKDFRKIASFLDHKTTADCIEFYYKNHKSDCFEKIKKKDGGKLRKLFTTKTDLMASGKKWKPDMNASSLEILSAASVMAGGITGNRKMRSGSSIWSGYGDLKTSRGEDSIAERLSGFDVLQDERETVAADVLAGICGSLPSEVMSSCINSSVEPVEGNRDMKVRSLCKQSVVPDVTQNIDDGTCSDESCGEMDPTDWTDGEKAAFIQAVSSFGKDFMMIARCVGTRSRDQCKVFFSKARKCLGLDLVHPRPENIGSLVNDDGNGGRSDPDDACVLEKGSVIESDMSGAKTDEDLPPSVMNTYHDESRAMEARDLSADLNESKKMGGAVTELVSASDIIEPCYTNPVADRLVSEVSSGCRGNEFEGSDIRLVDRDDILEADTDVVVELKHQAYHSSTLVNTSVSSVGISCSRLSFDAENQPQFCLDGKPHLSGPLEDPPPTANPMLQNTAGATVQHEKTASQNPLSSTCDFHGSKDISGHSSSSNGGCQLHNPGNLLDNVEAARILQCNPLQVPVKEVNADIRFRKTSRNGDLKLFGKILTNPSSTQNPTLTAQGNEENGTHHPKLSSTSSSLKFTGCHNANRKSTILKFDHNDNQGLENVPIMSYWDGSRKQPGLLSSLPDSAIVLAKYPDAFSNYPTSSKLEQQSLQMLAKNEQHLNGVSAFTTTEVNGSNGVIDYQVFRNRDGLKVQPFLVDVKDHQDVFSETQRINGFEAISSLQQQGRGMVGLNGVGRSGILVGGSGAGVSDPVAAIKMHFSNADQYGSQTGSIMRG 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi416g00012 825 SUPERFAMILY Homeodomain-like 248 297 IPR009057 -
Sebi416g00012 825 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 379 - -
Sebi416g00012 825 MobiDBLite consensus disorder prediction 505 539 - -
Sebi416g00012 825 Pfam Myb-like DNA-binding domain 38 79 IPR001005 -
Sebi416g00012 825 Pfam Myb-like DNA-binding domain 250 290 IPR001005 -
Sebi416g00012 825 SUPERFAMILY Homeodomain-like 22 82 IPR009057 -
Sebi416g00012 825 Gene3D - 15 87 - -
Sebi416g00012 825 CDD SANT 251 289 IPR001005 -
Sebi416g00012 825 Gene3D - 199 306 - -
Sebi416g00012 825 ProSiteProfiles SANT domain profile. 34 85 IPR017884 -
Sebi416g00012 825 SMART sant 247 295 IPR001005 -
Sebi416g00012 825 SMART sant 35 83 IPR001005 -
Sebi416g00012 825 MobiDBLite consensus disorder prediction 592 625 - -
Sebi416g00012 825 ProSiteProfiles SANT domain profile. 249 297 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi416g00012 Sebi-Chr416 386742 389305 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi416g00012 Myb_DNA-binding 7.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi416g00012 - - lang:109337705 879.396