Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi414g00078 ATGGCGCCGAGGGATAAGACGGCTGGCGTTAAGGTAAACGGCAACGGTAACGGCACCGTGAAGGAGGTGCATTTTCGGGGAGTGAGGAAGAGGCCATGGGGGAGATACGCTGCCGAGATCAGAGATCCCGGCAAGAAGAGCCGTGTTTGGCTCGGCACCTTTGACACGGCGGAAGAGGCGGCGAGAGCCTACGACGCCGCCGCACGGGAGTTTCGTGGCCCCAAGGCTAAAACCAACTTCCCCCTCCCTTCCGATAATGTAAAAAACCAGAGCCCTAGCCAGAGCAGCACCGTTGAATCCTCCAGCCGCGACCGCGACGCCGCTGCTGCCGTAGCCGATTCCTCGCCGCTGGACCTTAACCTGGCCCCAGCCGGAGCAGGATTCGCCGGACACGTTCGTTTCCCCTTCCAGCATCAATTCCCGCCGATGCCGGTGGCGAACCAGGCGTTGTTCTTCGACGCTGTCCTACGCAGCGGCATGGTGGGACCCCGTCCTGGCCAACGCTTCTTCGACTTTAATCTTCCGTTGGCGGCGAGTGAGTTTCACGCGACGGCAGGTGCACAAAGCGACTCGGACTCGTCCTCCGTGATCGATCTGAACCATCTGGAATGTGATGTTAAGGGTGGTAGAGACTTCGATCTCGACCTTAACCACCCTCCTCCGGAAGACGACGTCGCTTAA 681 0.6006 MAPRDKTAGVKVNGNGNGTVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPSDNVKNQSPSQSSTVESSSRDRDAAAAVADSSPLDLNLAPAGAGFAGHVRFPFQHQFPPMPVANQALFFDAVLRSGMVGPRPGQRFFDFNLPLAASEFHATAGAQSDSDSSSVIDLNHLECDVKGGRDFDLDLNHPPPEDDVA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi414g00078 226 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Sebi414g00078 226 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Sebi414g00078 226 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Sebi414g00078 226 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Sebi414g00078 226 MobiDBLite consensus disorder prediction 1 20 - -
Sebi414g00078 226 MobiDBLite consensus disorder prediction 74 112 - -
Sebi414g00078 226 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Sebi414g00078 226 MobiDBLite consensus disorder prediction 82 103 - -
Sebi414g00078 226 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 147 - -
Sebi414g00078 226 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Sebi414g00078 226 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Sebi414g00078 226 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Sebi414g00078 226 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi414g00078 Sebi-Chr414 906266 906946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi414g00078 1 87 AP2-EREBP Transcription Factor Family AT5G44210 70.526 3.61e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi414g00078 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi414g00078 K09286 - gmx:100170742 282.722