Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi414g00047 ATGCATTTCCCTTCAGCTATTGCTCAACCATTTGCAAGAATTTGGCTACTCTTCTATTTACTTATCCCTGTTGTTCTCATTAGTGGTAACCGAGATGAGGCTACCACTGCAAACAACAAAGTTATATCTATTGGGGCCATCATTGATGTTAATTCTCGTATTGGGAAAGAACAGCAAGTAGCCATGGACATTGCAGCTCGAAGTTACAATAGCACTTCAAAGAATTACAAGTTGGCTCTCCATTTTCGGAACTCCACTAAGGATCCCCTCAGAGCCATCACTCTTGCTGGAGAGATGATTAACATGCAAAAGGTTCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAGCTCTAGTGGCTGAAATAGGAAGCCAAACTCAAGTTCCTACAATATCCTTTGCGGAACCTACAGTTACCCCGCCATTGATGACAATTCGATGGCCTTTTTTGGTGAGACTGACTAACAATGGAACGGCATATATAAAATGCATTGCAGATATAGTGCAAGCTTTTAGATGGCAGAGAGTAGTGGCCATCTATGAAGATGATGGGTATGGTGGAGATTATGGGATGTTAGCACTGCTATCGGAGACCCTCCAAGATGTGGGTTCAATGATTGAGTACCGCTTAGCTCTTCCACCAATTTCTTCTCAGCATGATCCTGGAGAGCTAGTACATAAAGAGCTGCTTAAGTTAATGCAAACACAGTCTCGAGTGTTCATTGTGCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAAAGAAGCTTCAAAAAAGGGACTCATGAATAGAGAATCTGTTTGGATAATCCCAGAGAGCATAACTAATTTGCTGGATTCTGTCAATAAGTCTGCTATTTCCTATATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCCGAAACGAGTAGCCAGTATCAAAATTTTGAGGCTCAGTTCCGGAGAACATTTTGGTCAAAGAATCCAGAGGAAGATAACCGCTACCCAGGATTTTATGCTCTGCAAGCATATGATGCCATTAAAATTGTTGCTCAAGCAGTAGACAGAATGGCAAGTAGAAACAATACAAATCCAAAGACTTTACTGATGAGAGAAATTCAGTCTAGCAGTTTCCTTGGTTTAAGTGGCCAAGTTCAATTTGAAGCTGGGCAACTCTTGCAGAATCCTGTCTTAAGGATAGTAAACGTGGTTGGGAAGAGTTACCAGGAATTATGCTTTTGGACTCAAAAACATGGTTTCACCACAAGCCTCCCTACAGGACAAGGTGGAAAAAATGTTGCTGGAAATACAAAATGTTTCAAGGGTGTGCGTTGGCCTGGGGATTTGCACCGGGATCCAAAGGGCTGGAACATGCCTACTAAACAAAATCCATTGCAAATAGCAGTCCGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGGTTGAGTATGGCCAGAATCAAAATCCTGTAAAATACACTGGATTCTGCATTGAAATTTTTGAGCATGTGGTCAAACTTTTGGGGTACGATCTGCCGTTTCAGTATCACCCCATCGATGGAACCTATAATGACTTGGTTCAGCTTGTCTATAACAAGGTGCCATCTTGTTTTACACAATGGGAAAAAATGTACAGCAACTTAACTCGAGTGGTGATGGTCTCCTGGCTCTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCCTCAATGCTCACTGTTAAACAACTGCGACCAAATGTCACAGACATTGAGTGGTTGAGGAGGAACAACGTGAAAATTGGTTGCGATGGTGACTCGTTTGTTAGGTCATTCCTAGAGAAAGTAGAAAGGTTCAAGCTGGAAAACATCATAAACATTACTGATGAATACAAGTTTGATGATGCATTCGCAAATAAAAGCATAGCAGCTGCCTTTCTTGAACTCCCATATGAAAAAGTATTCATTAGTGAATACTGCAGGAGATACACTGGCTCCACTCCCAGAACTAGATTTGGAGGATTGGGTTTTATGTTCCAGAAAGGCTCGCCGTTGGCCAGAGATGTTTCTAAAGCTATATTGCATCTCTCAGAAAAGGCAGAGCTGAAGAGATTGGAAGAAAAGTGGTTGATTAACTCACAGGATTGCTCCAACAATATAACCTCTCCAAACACTGAAAGTTTGAAGCTTAGAAGCTTATGGGTTCTGTATGTCATCTCTGGTGGCACTTCCACCATTTGTCTGCTACTATCAACCATTCAGTGTCTAAAATCCAGTCAGCAATGCGAAGACATGCCGCTAGAAGGCAATGGCACACCAAGTGATGAGAGGGCATGGAAAAAGGTGACTACATTTGCAAAGAAAATTTATAGCAAAAAGCTCAATAATTCAAGCAAGGTACAAGATGTAACCGATTGTTCTTCGATATCGGATTGTGTGAGCATCACTGATACCTCCGAGCATCAACAGGAAATGGCTTTTCCAATAACTGGAATCTTAATGCTGCCTTCTCCACCACCAGAGGTACAGATGACAACACGTGATGTAGGAACCAAGGAACCACATGTTGTTTTTAGGACAGAATAA 2556 0.4155 MHFPSAIAQPFARIWLLFYLLIPVVLISGNRDEATTANNKVISIGAIIDVNSRIGKEQQVAMDIAARSYNSTSKNYKLALHFRNSTKDPLRAITLAGEMINMQKVQVIIGMHTWPEAALVAEIGSQTQVPTISFAEPTVTPPLMTIRWPFLVRLTNNGTAYIKCIADIVQAFRWQRVVAIYEDDGYGGDYGMLALLSETLQDVGSMIEYRLALPPISSQHDPGELVHKELLKLMQTQSRVFIVLQSSLEMVIHLFKEASKKGLMNRESVWIIPESITNLLDSVNKSAISYMEGALGIKTYYSETSSQYQNFEAQFRRTFWSKNPEEDNRYPGFYALQAYDAIKIVAQAVDRMASRNNTNPKTLLMREIQSSSFLGLSGQVQFEAGQLLQNPVLRIVNVVGKSYQELCFWTQKHGFTTSLPTGQGGKNVAGNTKCFKGVRWPGDLHRDPKGWNMPTKQNPLQIAVRSRTSFSKFVKVEYGQNQNPVKYTGFCIEIFEHVVKLLGYDLPFQYHPIDGTYNDLVQLVYNKVPSCFTQWEKMYSNLTRVVMVSWLFLVLILNSSYTASLSSMLTVKQLRPNVTDIEWLRRNNVKIGCDGDSFVRSFLEKVERFKLENIINITDEYKFDDAFANKSIAAAFLELPYEKVFISEYCRRYTGSTPRTRFGGLGFMFQKGSPLARDVSKAILHLSEKAELKRLEEKWLINSQDCSNNITSPNTESLKLRSLWVLYVISGGTSTICLLLSTIQCLKSSQQCEDMPLEGNGTPSDERAWKKVTTFAKKIYSKKLNNSSKVQDVTDCSSISDCVSITDTSEHQQEMAFPITGILMLPSPPPEVQMTTRDVGTKEPHVVFRTE 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi414g00047 851 SUPERFAMILY Periplasmic binding protein-like I 37 450 IPR028082 -
Sebi414g00047 851 SMART GluR_14 461 702 IPR001320 GO:0015276|GO:0016020
Sebi414g00047 851 Pfam Ligand-gated ion channel 536 732 IPR001320 GO:0015276|GO:0016020
Sebi414g00047 851 Gene3D - 163 332 - -
Sebi414g00047 851 FunFam Glutamate receptor 161 329 - -
Sebi414g00047 851 PIRSF IGluLR_plant 528 817 IPR017103 -
Sebi414g00047 851 PIRSF IGluLR_plant 9 529 IPR017103 -
Sebi414g00047 851 CDD PBP1_GABAb_receptor_plant 43 419 IPR044440 -
Sebi414g00047 851 CDD GluR_Plant 458 700 - -
Sebi414g00047 851 Gene3D - 459 709 - -
Sebi414g00047 851 Gene3D - 524 613 - -
Sebi414g00047 851 Gene3D - 339 458 - -
Sebi414g00047 851 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 540 774 IPR015683 -
Sebi414g00047 851 Pfam Receptor family ligand binding region 59 399 IPR001828 -
Sebi414g00047 851 SUPERFAMILY Periplasmic binding protein-like II 440 701 - -
Sebi414g00047 851 Gene3D - 36 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi414g00047 Sebi-Chr414 529909 534117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi414g00047 532 765 Ion Channels AT5G11180 36.134 2.28e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi414g00047 - - gmx:100818619 829.706