Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi414g00046 ATGGAGATTGCAGCTCAAAATTTCAATAATTATTCAAACACTCAAAACATAGTCCTCTTCTTCCGTGACTCTGGTAGAAACCCATTGCAAGCAGCTTCAGCTGCTGAAGAATTAATTACTAAGGAGAAAGTTAAAGTCATTATTGGCATGGAGACATGGCAGGAAGCAGCTCTTGTTGCTGACCTTGGAGCCAAAGCTCAAGTACCAATTATTTCATTTTCTGCTCCCCCAGTGGTCCCTCCATTAATGCAACTTCGTTGGCCTTACTTGATTCAAATGGCTAAAAATCAGGCTGCACACTTGAACTGCATAGCAGACATTATCCATGCCTACAGCTGGCAGAAGGTTATAGCTATATATGAAGACAACCCTTATAGTGGTGATTCTGGAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGTTAACTCCCAGATTGAGTACCGATTAGTTCTTCCATCGTTCACTTCTTTATCTGATCCAAAAGGGGTTGTTCTTGATGAATTGCTGAAGTTGTTGCCACTTAAATCTCGTGTTTTTATTGTACTTCAAGCATCATTACCTATGGTGATCCATTTGTTTAGGGAAGCTAAGAAAATTGGATTCTTGGAGAAAGACTCAGCATGGATCATCAATGAGGGGATTACAAGTATGTTGGACTCTGTCAATAAATCTGTTTTATCCTCTATGCAAGGTACTTTGGGAATCAAAACCTACTATTCTACAAGTTCTAGTGCTTATACTCAGTTGCAGGAAAACTTCAAAGCTAAGCATACAGAAACAGTTGGGTCTAAACCAGGATCAGATGCCCTACTAGCTTATGATAGCATCACAGTTGTCACAAAGGCCTTGGAGAAAATGAATACCAATTCTAGTAGCTCAAAGGTGTTCTTGGAGGAAATGTTGTCAGCCAGGCCCAATTTTAATGAAGAGAGAAATCTATCGGACACTCCAGTATTGAGAGTTATAAACGTGGTTCATGAGAATTACATGGAATTAGACTTTTGGACCCCAAAGTTGAAGTTTTCTGGATCTCTTGAAATACTGAAAGACAGAGAGAAAAGAGGTGATCATGCTACAAAAAACTTAACTGGCTTAGTGCTTTGGCCAGGAGGCCTAAGTTCTGTGGATCCTCATCCTCCTAATGGATGGAAAGTACCTACCAATGAAAACCCTTTAAAAGTTGCAATTCCTATGAACCCTGCTTTTGATAGTTTTTTAAAGGAAGACTCTCCGAATCATTATAGTGGTTTTTGTATTGCACTTTTCCATGCAGTCAGAGAAATTCTGAGTGACAAGTATTTTGGTCTGCCTTATGTATTTTACTCCTTCAATGAATCCTATGATAGTCTTCTACTGAAAGTCATAAATGAGTCCCATGATGCTATTGTAGGAGATGTAACAATACTTTCCAACCGATCAAAGGATGTGTGGTTCACTATACCATACACTGAGTCGGGCTTATTACTCATATTTCCAGTAGAGACTGAAGGGTCAGCATGGTTGTTTACGAAACCATTCAGCTGGGAAATGTGGATTGCAACTATTGCCATCCTCATCTACACAACGTTCATCATTTGGTTCCTGGAGCATCACCTCAACCCAGATTTTGGGCATGGATCATTGAAAAATCAGATCAGCACCACACTTTGGTTTGCATTTAATTCTCTATATTTTGCTCATACGGAGAACATAAACAGAAACTCTGCACGAGTAGTAGTTGGCGTATGGTTATTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCAAGCCTTTCTTCATTGCTTACTGTCAAACGGTTGAAGTCTGGAAGAGACATCGAATGGCTTAAACAAAACAGCCTATCAGTTGGTTGTGATAACAACAGTGCCTTTGTAAAGAACTACTTGGTCAACGTGTATAATTTCAGCCCACAGCAAGTAGTAGATGTTGATGGAGAACATGACATTGTGGATAAATTCAAGAACAAAAGAATCTCTGCTCTCTTTCTTGAGACCCCATATGAGAAGGTTTTCTTGAACAAGTACTGCAATGATTACACTGCAATCACAGCTGCCTATAAATTTGGAGGAATGGGATTTGTATTCCAAAAAGGGTCTCCCATGGCAAAGGACTTCTCTGAAGCCATTTTAGAACTAGCAGAAAATGGAAAACTAAAAGCTTTGGAAGAGCAATGGTTGACCCCTTCCAAGGAATGTTCAAACAACTCAACATCTCCAGAGACTGATAGCCTGACTCTAGACAAGTTTTGGGGTCTATATATCATATGTGCTGCCACTTCCACCATCTGCTTATTGCGAGCCTTATGGAAGAATTACCTCCATAACCGTAACCATTGCCATCATGAAGAGGAAGCTCAAGTTCAAGGGAATGTAACCGCTGATGATAATAGTGTTTGGAAGAAGCCATTGCCATTGAGAATCAGCACAGGCTTTTACAATGGGAATCCCAAAACTATAAATAGAGCTGCAACTTTTGGTGGAAGTAGAACACAGAGTTTACGTCGTCGAAATTCCTCAACGTGGCCGAGTATAAGCTTTTCTGATGAACTCAGTCATCAACAACATCGCTCCAAATCAATTGTCATAGAAATGATGTAA 2601 0.3995 MEIAAQNFNNYSNTQNIVLFFRDSGRNPLQAASAAEELITKEKVKVIIGMETWQEAALVADLGAKAQVPIISFSAPPVVPPLMQLRWPYLIQMAKNQAAHLNCIADIIHAYSWQKVIAIYEDNPYSGDSGMLSLFSEALQKVNSQIEYRLVLPSFTSLSDPKGVVLDELLKLLPLKSRVFIVLQASLPMVIHLFREAKKIGFLEKDSAWIINEGITSMLDSVNKSVLSSMQGTLGIKTYYSTSSSAYTQLQENFKAKHTETVGSKPGSDALLAYDSITVVTKALEKMNTNSSSSKVFLEEMLSARPNFNEERNLSDTPVLRVINVVHENYMELDFWTPKLKFSGSLEILKDREKRGDHATKNLTGLVLWPGGLSSVDPHPPNGWKVPTNENPLKVAIPMNPAFDSFLKEDSPNHYSGFCIALFHAVREILSDKYFGLPYVFYSFNESYDSLLLKVINESHDAIVGDVTILSNRSKDVWFTIPYTESGLLLIFPVETEGSAWLFTKPFSWEMWIATIAILIYTTFIIWFLEHHLNPDFGHGSLKNQISTTLWFAFNSLYFAHTENINRNSARVVVGVWLFLVFVLTSSYTASLSSLLTVKRLKSGRDIEWLKQNSLSVGCDNNSAFVKNYLVNVYNFSPQQVVDVDGEHDIVDKFKNKRISALFLETPYEKVFLNKYCNDYTAITAAYKFGGMGFVFQKGSPMAKDFSEAILELAENGKLKALEEQWLTPSKECSNNSTSPETDSLTLDKFWGLYIICAATSTICLLRALWKNYLHNRNHCHHEEEAQVQGNVTADDNSVWKKPLPLRISTGFYNGNPKTINRAATFGGSRTQSLRRRNSSTWPSISFSDELSHQQHRSKSIVIEMM 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi414g00046 866 FunFam Glutamate receptor 500 631 - -
Sebi414g00046 866 Pfam Receptor family ligand binding region 3 295 IPR001828 -
Sebi414g00046 866 FunFam Glutamate receptor 100 266 - -
Sebi414g00046 866 Pfam Bacterial extracellular solute-binding proteins, family 3 406 728 IPR001638 -
Sebi414g00046 866 SUPERFAMILY Periplasmic binding protein-like I 2 342 IPR028082 -
Sebi414g00046 866 Gene3D - 387 500 - -
Sebi414g00046 866 Gene3D - 501 636 - -
Sebi414g00046 866 SUPERFAMILY Periplasmic binding protein-like II 364 728 - -
Sebi414g00046 866 PIRSF IGluLR_plant 1 862 IPR017103 -
Sebi414g00046 866 Gene3D - 100 264 - -
Sebi414g00046 866 Pfam Ligand-gated ion channel 729 759 IPR001320 GO:0015276|GO:0016020
Sebi414g00046 866 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 786 IPR015683 -
Sebi414g00046 866 Gene3D - 1 99 - -
Sebi414g00046 866 Gene3D - 670 735 - -
Sebi414g00046 866 SMART GluR_14 392 729 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi414g00046 Sebi-Chr414 520460 524147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi414g00046 1 779 Ion Channels AT2G29120 32.403 2.61e-124 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi414g00046 - - gmx:100818078 1271.91