Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi414g00044 ATGGGGTCTGAAGACAAAGATGGTGAACAACAGTCACTTGGTATAGGCCTTAAGGCGCCAACAGAGAAGACGTCAAATTCACCTTCTTATCAGATCACATTCAAATTGCCACCAATTGATGTGAGTTTAGTGGAGCCACCCAATTCTGGTCTTCACCCTTTGATCATAGCCTCGCTGCCTAAACTATTGTACAACCAAACGGACCACTTCAGACAATGTGAAGAAGGAGCTACAGAGTGCTCTGTTTGCTTAGCCACTATTCTGGAAGATGCAACTATTAGGTTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAGTTCCAACACCACATGCCCAATTTGCCGCACCGTGGCTGAACCCAGGCTCCAGGTCCAACCCACAGCACCACCTGTAGACGATGAGCCACAAGATGGTAGTGAATTGGAGAAGGTGGGCTGTTCAGGCTTAAGAAAAGGATCTTTTCATAGAATGGTTAGTGGCAGGGAAAGATCATTGAGAAGGACTCAAAGCTCTCATGAATCCATAGAAGATACAGAAAGACATTAA 567 0.4409 MGSEDKDGEQQSLGIGLKAPTEKTSNSPSYQITFKLPPIDVSLVEPPNSGLHPLIIASLPKLLYNQTDHFRQCEEGATECSVCLATILEDATIRLLPNCKHIFHVDCVDKWFSSNTTCPICRTVAEPRLQVQPTAPPVDDEPQDGSELEKVGCSGLRKGSFHRMVSGRERSLRRTQSSHESIEDTERH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi414g00044 188 MobiDBLite consensus disorder prediction 132 151 - -
Sebi414g00044 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 127 IPR013083 -
Sebi414g00044 188 SUPERFAMILY RING/U-box 58 133 - -
Sebi414g00044 188 MobiDBLite consensus disorder prediction 1 29 - -
Sebi414g00044 188 Pfam Ring finger domain 79 122 IPR001841 -
Sebi414g00044 188 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 45 135 IPR045899 -
Sebi414g00044 188 ProSiteProfiles Zinc finger RING-type profile. 80 122 IPR001841 -
Sebi414g00044 188 MobiDBLite consensus disorder prediction 164 188 - -
Sebi414g00044 188 SMART ring_2 80 121 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi414g00044 Sebi-Chr414 499537 500186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi414g00044 36 188 C3H Transcription Factor Family AT2G42360 39.655 3.48e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi414g00044 K19038 - gmx:100786701 227.639