Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi413g00027 ATGTACGGACAGAGTAATTACGAGGCCGATTTGGCCGTTTTGGACTCTATTCGCCGCCACTTGTTGGGTGAGCCCGAATTAAAATTCGGGGCTCCGACAACAAATTCGGGTGACTCCAAAGTTTACTCTCGGAGCTCCAGTTTCAGCAGCTTGTACCCGTGTTTAAGTGACAATTGGGGCGAACTACCACTCAAAGAGGACGATTCCGAAGACATGGTTCTCTACGGTGTGCTCCGTGACGCCGTTAATGTTGGGTGGGTCCCATCTCTCGATGCCGGGTCACCCGAAAGCGTCTCATCGGGTTACCCGACGGAGATTAAGGTAAAACCCGAACCGGACGTCATGCCGCCGGAAAATGGAACCATGATGCTCGCGGCGGAGACGAAGGTGATCACGCCGGAGCAGCCGAAGGCTGCTCCAGCGAAGGGGAAGCACTACCGCGGCGTGAGACAACGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGAGACCCGGCGAAGAACGGGGCTCGGGTTTGGCTTGGAACGTTCGAGACCGCTGAGGATGCTGCTTTGGCTTACGATAGAGCTGCGTATAGGATGAGAGGTTCGAGAGCTTTGTTGAATTTTCCGCTTCGGATCAACTCCGGTGAACCCGACCCGGTTAGGGTGACATCGAAAAGGTCTTCTTCGCCGGAAAGTGGTTCATCGCCGGCGAAGAGGAAGAAGTTGGTGACAGCGGTTCAAGGAGGATTAAAACGGGGCAAGTGGGAAGTCAAGTGGTGGCACAGTGTACACGTGGAGAGCAATTATTGGTTAGTTAATGCGTAA 807 0.5489 MYGQSNYEADLAVLDSIRRHLLGEPELKFGAPTTNSGDSKVYSRSSSFSSLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLDAGSPESVSSGYPTEIKVKPEPDVMPPENGTMMLAAETKVITPEQPKAAPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPDPVRVTSKRSSSPESGSSPAKRKKLVTAVQGGLKRGKWEVKWWHSVHVESNYWLVNA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi413g00027 268 MobiDBLite consensus disorder prediction 214 229 - -
Sebi413g00027 268 PANTHER DNA-BINDING DOMAIN 121 227 IPR044808 GO:0003700|GO:0009873
Sebi413g00027 268 MobiDBLite consensus disorder prediction 93 114 - -
Sebi413g00027 268 MobiDBLite consensus disorder prediction 210 236 - -
Sebi413g00027 268 CDD AP2 144 203 IPR001471 GO:0003700|GO:0006355
Sebi413g00027 268 Gene3D AP2/ERF domain 144 206 IPR036955 GO:0003700|GO:0006355
Sebi413g00027 268 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
Sebi413g00027 268 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Sebi413g00027 268 Pfam AP2 domain 145 195 IPR001471 GO:0003700|GO:0006355
Sebi413g00027 268 FunFam Ethylene-responsive transcription factor 2 144 204 - -
Sebi413g00027 268 SUPERFAMILY DNA-binding domain 145 205 IPR016177 GO:0003677
Sebi413g00027 268 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700|GO:0006355
Sebi413g00027 268 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi413g00027 Sebi-Chr413 654389 655195 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi413g00027 1 247 AP2-EREBP Transcription Factor Family AT4G17500 54.264 3.40e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi413g00027 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi413g00027 K09286 - gmx:100803653 320.472