Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi413g00024 ATGGCTAACGCAGTTGAAGTTTCAGCTCTCAATCGTATTAAATTGCATCTTCTAGGTGAACTCTCTCCACTTGCTACTTCACCCCAAAACAAACAACCCTGGTTTCAACAACTTGATGGACCAAACCCTAGCCCCTCTCAATCCAACTCTTCCACTTCTGAATCTTCAATTTCTTTGGATCATTACTTCACTGACCTTCTCGAAACGGAAACAGAGGTTCCCCTGTTTGAATTTGAGTTCAAACCACAACCAATTGACCTCGATACACCAAAAGCCCTAACATCGAACCATACACCTCAACAAACCATCGAGAAGAAGCCTCAATTGAGCCGTAAACCGTCGCTGCAAATCTCTCTCCCCAAGAAAACCGAGTGGATCCAATTCGGAAACCTGGATCCGAACCCGGAGGCTTTGGTGCAGCAGAACCAACCCGAGCCTGTGGAGAAGAAGCACTACAGAGGAGTACGACAGAGGCCGTGGGGGAAATTCGCTGCAGAGATCCGAGATCCGAACAAGCGCGGGTCTAGGGTTTGGCTTGGAACGTTCGACACCGCCATCGAAGCCGCTAAAGCCTATGACAGAGCCGCGTTTAAGCTTCGTGGCTCTAAAGCTATTCTCAACTTCCCCTTGGAAGTTGCCGCCTCTGCAGAGGCGGTGGATTCCGGCGAGGGTGAGAGGAAACGCCGTCGTGAAGAGGAGGAGGTGGTGGAAGAAGTGAAAACGGTGGTGAAAAAGGAGGAAAACGATGGAATTCGATGTGAACTGTTTTAA 771 0.4942 MANAVEVSALNRIKLHLLGELSPLATSPQNKQPWFQQLDGPNPSPSQSNSSTSESSISLDHYFTDLLETETEVPLFEFEFKPQPIDLDTPKALTSNHTPQQTIEKKPQLSRKPSLQISLPKKTEWIQFGNLDPNPEALVQQNQPEPVEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEVAASAEAVDSGEGERKRRREEEEVVEEVKTVVKKEENDGIRCELF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi413g00024 256 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700|GO:0006355
Sebi413g00024 256 SMART rav1_2 151 215 IPR001471 GO:0003700|GO:0006355
Sebi413g00024 256 MobiDBLite consensus disorder prediction 26 55 - -
Sebi413g00024 256 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700|GO:0006355
Sebi413g00024 256 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Sebi413g00024 256 MobiDBLite consensus disorder prediction 87 114 - -
Sebi413g00024 256 CDD AP2 150 209 IPR001471 GO:0003700|GO:0006355
Sebi413g00024 256 MobiDBLite consensus disorder prediction 89 114 - -
Sebi413g00024 256 Gene3D AP2/ERF domain 150 212 IPR036955 GO:0003700|GO:0006355
Sebi413g00024 256 SUPERFAMILY DNA-binding domain 151 211 IPR016177 GO:0003677
Sebi413g00024 256 PANTHER DNA-BINDING DOMAIN 102 225 IPR044808 GO:0003700|GO:0009873
Sebi413g00024 256 FunFam Ethylene-responsive transcription factor 2 150 211 - -
Sebi413g00024 256 Pfam AP2 domain 151 201 IPR001471 GO:0003700|GO:0006355
Sebi413g00024 256 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi413g00024 Sebi-Chr413 603012 603782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi413g00024 1 248 AP2-EREBP Transcription Factor Family AT5G47230 48.162 5.74e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi413g00024 AP2 2.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi413g00024 K09286 - gmx:100800453 280.796