Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi413g00020 ATGCATATAGAGGAATTGAAAGGAGGTGAGGTGGGGGAAGGTGGAGAGGAAGGGAGATCGAGCTTTGTTGGTTATGATACCAAGAGGGTTCTGGTTGGAGCAGGCGCTCGTGCCCTCTTCTATCCCACCCTGTTTTACAATGTCGTTAGGAATAAGATTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCCCGCTTGAAGGAGCTTGGTGTTCGTGGGGTCATCACATTGAATGAGTCATACGAGACTTTGGTTCCAACCACATTATATTATGCTCATGGAATTGATCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCATCATTGCATAACATACACCGAGCTGTGGACTTTATACATGAAAATGCATTGTCTGGACGCACTACATATGTTCACTGCAAAGCTGGACGGGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAACTGATGACACCTGATGCTGCATATGAATATGTGAAGTCAATTCGGCCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGCTGTCCAGGAATACTACCACCATCTTATGATGAGGAGGGCTGTTGGATGTGCTCCTACAGCCGATCTATTACTAAAGGCTTCCAGGGTTGCAGCAGCTTCACGAGATCTTGTAAAGTTTGATGACAGTTCTGTAGTCGTGGTAACTGAGCAAGATCTTGAAGGATACGACCCAAGTTGTCAATCAGGAACCATGACAAGTGAAATATGGGCAGATTTAAGCGTTGTTTACCGTGTGCGAGTTGCTGGACAGGCAGCATTGGCAAGAATATCATGCCTTTGGCTGCGATATGGTACCGACCAGAAGATTTCTGCGGAGAGGGAAAACAGTTGCTCAATGAGGACGAATCACTTGGGAGGAATTAGTGTTGATATCCACGTGTACTGA 972 0.4558 MHIEELKGGEVGEGGEEGRSSFVGYDTKRVLVGAGARALFYPTLFYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVRGVITLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLHNIHRAVDFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKLMTPDAAYEYVKSIRPRVLLASSQWQAVQEYYHHLMMRRAVGCAPTADLLLKASRVAAASRDLVKFDDSSVVVVTEQDLEGYDPSCQSGTMTSEIWADLSVVYRVRVAGQAALARISCLWLRYGTDQKISAERENSCSMRTNHLGGISVDIHVY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi413g00020 323 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 205 IPR029021 -
Sebi413g00020 323 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 295 - -
Sebi413g00020 323 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Sebi413g00020 323 FunFam Dual specificity phosphatase domain protein 59 206 - -
Sebi413g00020 323 Gene3D Protein tyrosine phosphatase superfamily 59 210 IPR029021 -
Sebi413g00020 323 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Sebi413g00020 323 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Sebi413g00020 323 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Sebi413g00020 323 CDD PTPMT1 59 201 IPR044596 GO:0004721
Sebi413g00020 323 Pfam Dual specificity phosphatase, catalytic domain 82 201 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi413g00020 Sebi-Chr413 524087 527340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi413g00020 18 323 Protein tyrosine phosphatase (PTP) family AT2G35680 60.828 9.26e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi413g00020 - - gmx:100790413 565.844