Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi412g00034 ATGACAGCTCTCTCTAAGCTCTTCCACAAGCTTTGGGGCAAAATGATGATCCTATTGGCATTCCTGCTAATAGAACTCATCATCCTATTTTGGAAACTAACCTCAGATACACGCCCAATCACCACACGGCAATACCTCAAATTCATTGAACAGAAGAACCCCACGATTCGCTACACCAAAAGATTGAAGGCAGAGCAAGTGGAGTGTACGGTGTGCTTATCTGAATTTGAGGAAGGAGATAAGGTGAGGAAGTTGAAATGCAAACACATGTTTCATAGGGATTGTTTGGATAAGTGGTTGCAAGAATATTGGGCTACATGCCCACTTTGTAGGATTCAAGTGTTGCCTGATGATGTTGTGTCTAAGCATCGTCAGCTTCGAAATCAGGAAGGTTCTTCTAATGGGAATGATGAGCATCTTCCCTATTTGTTATTCGCATTACGCGGTGGTAATTCTAGTGCTCGCAGATATCTCTGA 477 0.4277 MTALSKLFHKLWGKMMILLAFLLIELIILFWKLTSDTRPITTRQYLKFIEQKNPTIRYTKRLKAEQVECTVCLSEFEEGDKVRKLKCKHMFHRDCLDKWLQEYWATCPLCRIQVLPDDVVSKHRQLRNQEGSSNGNDEHLPYLLFALRGGNSSARRYL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi412g00034 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 116 IPR013083 -
Sebi412g00034 158 Pfam Ring finger domain 68 111 IPR001841 -
Sebi412g00034 158 SUPERFAMILY RING/U-box 47 117 - -
Sebi412g00034 158 PANTHER - 1 152 - -
Sebi412g00034 158 FunFam Putative RING zinc finger domain superfamily protein 41 116 - -
Sebi412g00034 158 SMART ring_2 69 110 IPR001841 -
Sebi412g00034 158 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi412g00034 Sebi-Chr412 716501 716977 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi412g00034 68 122 C3H Transcription Factor Family AT1G15100 54.545 8.50e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi412g00034 K16282 - gmx:102668078 205.297