Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi412g00032 ATGGCATCTCTCTCTAGTCTCTTCAAATACCTCTGTTGCAAGATGATAATCCTATTAGCAGTCCTCCTAATAGAACTCATCATCCTCTTTCGGAAACTAACTTCAGATACACGTCCAATCACCACACAGCAATACCTCAAATTCATTGAACAGAAGAACCCCACCATTTGCTACACCAAAAAGGTACTGAAACTTGAAGAGCAAGTGGAGTGTACGGTGTGCTTATCTGAATTCGAGGAAGGAGATAAGGTGAGGAAGTTGAAGTGCAAACACACGTTTCACAGAGATTGTTTGGACACGTGGTTGCAAGAATATTGGGCTACATGTCCACTTTGTAGGATACAACTGTTGCCATATGATATTGTGTCCAAGCATCGTCTTCGGAATGTCGAAGGTTTTAATGGGAATGATGAGCACTTTCCCTTTCTGTTATCCGCATTAAGTGGTGGTAATAGAATAAGTAACTTCATCTTTTAG 477 0.4088 MASLSSLFKYLCCKMIILLAVLLIELIILFRKLTSDTRPITTQQYLKFIEQKNPTICYTKKVLKLEEQVECTVCLSEFEEGDKVRKLKCKHTFHRDCLDTWLQEYWATCPLCRIQLLPYDIVSKHRLRNVEGFNGNDEHFPFLLSALSGGNRISNFIF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi412g00032 158 SUPERFAMILY RING/U-box 58 119 - -
Sebi412g00032 158 Pfam Ring finger domain 70 113 IPR001841 -
Sebi412g00032 158 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Sebi412g00032 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 118 IPR013083 -
Sebi412g00032 158 FunFam Putative RING zinc finger domain superfamily protein 40 118 - -
Sebi412g00032 158 PANTHER - 1 151 - -
Sebi412g00032 158 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi412g00032 Sebi-Chr412 685415 685891 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi412g00032 70 124 C3H Transcription Factor Family AT1G15100 54.545 1.34e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi412g00032 K16282 - gmx:102661897 188.348