Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi412g00030 ATGGCTGATCACTCAGATTCTTCTCCTCTTGTCCCTCCTCTCCCACTCTCTGACCCTTCCGAGATCGACCTTGAAGCCGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTTGAAACTGATGGTAGAGATTTCATAGCTCCTTGTAAGTGCAAAGGTACATCGAAATATGTACATCGAGAATGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCTTGAAGTTTCGTTTTTTTGTCACCAGAGACATTTTGTTTATTTTCATGGCTGTCCAGCTTGTCATTGCCTCGCTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAACTGAGCTTTTACTACATATGTGGAGCTCTTTGTTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCAGGAGTTTGTGCAGACTGTCATTTGCCAGGTACCCTTTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGCGTATTGGTGGCTACTATGGTAGGTCAACGGATATGGCAACGTCACTATCACATACTTGCAAAAAGGATGTTAACAAAGGTCATATGCAGGCTTGTTTCAGACCAATTCCTCAAGTTGGTCCTCATTCACACATCCCTAATGAGTGGAGTTTGCAATCCTTTGCTGCTCTTCCATTTCTTCCTGTGGAGTATGTTGTTGAAGACGTTGATGGAGAGATGACAGGGTCTGATTGGTCTCCCCCTTCCCTCCCACCTGAACATGTTCAGCAGTTGAAAACATTGGGCCTCCTATGA 993 0.4471 MADHSDSSPLVPPLPLSDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFMAVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSELSFYYICGALCFLPCLAFLGASLLVMIEEFAMIWLSLVENYVFVAVNQEFVQTVICQVPFVCGLIAPHALRVVEPWQQNVVVVWERIGGYYGRSTDMATSLSHTCKKDVNKGHMQACFRPIPQVGPHSHIPNEWSLQSFAALPFLPVEYVVEDVDGEMTGSDWSPPSLPPEHVQQLKTLGLL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi412g00030 330 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Sebi412g00030 330 CDD RING_CH-C4HC3_MARCH 34 82 - -
Sebi412g00030 330 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 329 - -
Sebi412g00030 330 SMART ringv_2 33 82 IPR011016 GO:0008270
Sebi412g00030 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 96 IPR013083 -
Sebi412g00030 330 SUPERFAMILY RING/U-box 29 86 - -
Sebi412g00030 330 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi412g00030 Sebi-Chr412 617521 621857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi412g00030 289 330 C3H Transcription Factor Family AT2G22120 80.952 1.78e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi412g00030 - - gmx:100791777 318.546