Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi412g00027 ATGAGTGTGTACGATCCTATCCACCAGATTAGTAGTATGTGGGGGGAAGGGTTTAAAACCAATGGTAATTTAGGTGCACAAATTCCCTTAATTGATGAGGCAGACATGAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATACTGGGAACACCTAACAAGTATGACCAAGAAGCTCATAAACCTACTGATAAGATACAAAGACGTCTTGCACAGAATCGAGAGGCTGCTCGTAAGAGCCGTCTGCGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAACAGGGAATGTATATAGGTGGTGGGTTGGATTCTAATAATCTCAGTTTTGCTGGACCTGTAAATTCAGGAATTACAGCCTTTGAGATGGAGTATGGACTTTGGGTGGACGAGCAAAACAGGCAAATCTCAGAAGTGAGAAATGCTTTAAATGCTCATATTGGTGACATAGAGCTTAGGATTCTGGTAGATGGTATGATGAACCACTATATTAAAATCTTTCGCCTGAAATCTGCAGCTGCAAAAGCAGATGTTTTCTATGTCATGTCTGGAATGTGGAAAACAACAGCAGAAAGATTTTTCTTGTGGATTGGAGGCTTTCGGCCCTCCGAGCTTCTAAAGGTTCTTGGTCCAATGATTGAACCCTTGACAGAGAAACAACGGTTGGATATTGAAAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTTTCACAAGGAATGGACAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGACAATTCGTTGAAGGAACTTATATTCCACAAATGGCATCTGCAATGGAGAAGTTGGAAGCTCTGGCTGATCATCTTCGGCAGGAAACATTGCAGCAAATGTCTAGAATACTTACAATCCGTCAGTCAGCACGATGCTTGCTTGCTTTGGGGGAATATTTCCAACGCCTGAGGGCTTTAAGCTCACTATGGTCTAATCGACCCCGTGAACCTGCTTAG 1035 0.4338 MSVYDPIHQISSMWGEGFKTNGNLGAQIPLIDEADMKFDSQSEDASHGILGTPNKYDQEAHKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNNLSFAGPVNSGITAFEMEYGLWVDEQNRQISEVRNALNAHIGDIELRILVDGMMNHYIKIFRLKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPMIEPLTEKQRLDIENLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFVEGTYIPQMASAMEKLEALADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi412g00027 344 FunFam BZIP family transcription factor 65 114 - -
Sebi412g00027 344 SUPERFAMILY Leucine zipper domain 66 108 IPR046347 GO:0003700|GO:0006355
Sebi412g00027 344 Pfam bZIP transcription factor 64 100 IPR004827 GO:0003700|GO:0006355
Sebi412g00027 344 CDD bZIP_HBP1b-like 66 118 - -
Sebi412g00027 344 PANTHER TRANSCRIPTION FACTOR TGA9 2 342 - -
Sebi412g00027 344 ProSiteProfiles DOG1 domain profile. 135 339 IPR025422 GO:0006351|GO:0043565
Sebi412g00027 344 MobiDBLite consensus disorder prediction 43 62 - -
Sebi412g00027 344 Gene3D - 65 114 - -
Sebi412g00027 344 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 108 IPR004827 GO:0003700|GO:0006355
Sebi412g00027 344 SMART brlzneu 62 133 IPR004827 GO:0003700|GO:0006355
Sebi412g00027 344 Coils Coil 281 301 - -
Sebi412g00027 344 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Sebi412g00027 344 Pfam Seed dormancy control 152 226 IPR025422 GO:0006351|GO:0043565
Sebi412g00027 344 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi412g00027 Sebi-Chr412 535773 540507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi412g00027 3 344 Calmodulin-binding Proteins AT5G10030 68.857 2.05e-172 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi412g00027 DOG1 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi412g00027 K14431 - gmx:100793353 609.757