Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi412g00019 ATGGAGAAAAGGGGGAATGTATTGATGCAGAAGTATGAGTTTGGCAGACTATTAGGCCAAGGGAACTTTGCAAAGGTTTACCATGCAAGGGACCTAAGAACTGGTGACAGTGTTGCCATTAAGGTTATTGACAAGGAGAAAGTCCTAAAAATTGGGCTGGTGGATCAAACCAAGAGAGAGATATCTATTATGAGACTGGTTAAACATCCAAATGTTTTGCAGCTTTATGAGGTATTGGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGTGAACTTTTCAACAAGGTAGCTAAAGGTAGACTTCCTGAGGACATGGCAAGGAAGTACTTTCAACAATTGATCAGTGCTGTTGATTTTTGCCACAGCAGGGGTGTTTATCACAGGGATTTGAAGCCAGAGAATTTGCTTTTGGATGAGAATGGAGTTCTCAAAGTAGCAGATTTTGGATTATGTGCACTTGTTGAATCTCATCGCCAAGGCAACATGCTGCATACAGTTTGTGGAACTCCTGCATATGTAGCTCCTGAGGTTATAAGTAGAAAGGGTTATGATGGAGCAAAAGCTGATGTTTGGTCTTGTGGGGTGATCTTATATGTTCTTTTGGCTGGTCATTTGCCATTCTATGATTTGAACCTTATGGCACTGTACAGGAAAATAGGCAAAGCAGAATACAAATGTCCAAATTGGTTTTCATTTGAAGTGCGCAGACTATTAGCAAAGATCCTTGACCCCAACCCTGATTCTAGGATTTCCACAGCTAAAGTTTTGGAAAATTCATGGTTCAGAAAAGGACTCAACTCCAAATCTGTTCAATTGAAAAGAGAGGTTGCAAATGTGGCTTCAGTTGATTCTGATAAAGTTTTTGATTTGTGTGAGAATGGAAGTGGTGCTGCTCTTGAGGCACATCAAGCATTGGTTATACCAACAAATTTAAATGCTTTTGATATAATTTCTCTGTCTGCTGGGCTTGACTTGTCAGGCCTTTTTCCAAGCAATGAGGAACAAGAAGATATCAAATTTACATCCATGAGCTCTGCCTCATCTATCATGTCTACAATGGAGGATATTGCTCACACTCTGAAGATGAAGATAACTAAGAAGGATGGGGGGTTGTTGAAACTGGAGAGATCCAGGGAAGGTAGAAAAGGGCCACTTTCAATTGATACTGAAATATTTGAGTTCACCCCATCTTTCCATTTGGTTGAGATGAAGAAAACCTCTGGTGATGCATTAGAATACCAAAAGATACTGAAAGAGGATATAAGACCAGCTCTCAAAGATATTGTATGGAATTGGCAAGGTGAGCAGCAACAGCAGTAG 1335 0.4022 MEKRGNVLMQKYEFGRLLGQGNFAKVYHARDLRTGDSVAIKVIDKEKVLKIGLVDQTKREISIMRLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNKVAKGRLPEDMARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDENGVLKVADFGLCALVESHRQGNMLHTVCGTPAYVAPEVISRKGYDGAKADVWSCGVILYVLLAGHLPFYDLNLMALYRKIGKAEYKCPNWFSFEVRRLLAKILDPNPDSRISTAKVLENSWFRKGLNSKSVQLKREVANVASVDSDKVFDLCENGSGAALEAHQALVIPTNLNAFDIISLSAGLDLSGLFPSNEEQEDIKFTSMSSASSIMSTMEDIAHTLKMKITKKDGGLLKLERSREGRKGPLSIDTEIFEFTPSFHLVEMKKTSGDALEYQKILKEDIRPALKDIVWNWQGEQQQQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi412g00019 444 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi412g00019 444 Pfam NAF domain 313 371 IPR004041 GO:0007165
Sebi412g00019 444 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi412g00019 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 431 - -
Sebi412g00019 444 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Sebi412g00019 444 Gene3D Transferase(Phosphotransferase) domain 1 3 316 - -
Sebi412g00019 444 SUPERFAMILY Protein kinase-like (PK-like) 8 283 IPR011009 -
Sebi412g00019 444 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Sebi412g00019 444 FunFam Non-specific serine/threonine protein kinase 311 435 - -
Sebi412g00019 444 CDD CIPK_C 317 431 - -
Sebi412g00019 444 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Sebi412g00019 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Sebi412g00019 444 Gene3D Kinase associated domain 1, KA1 317 436 - -
Sebi412g00019 444 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi412g00019 444 FunFam Non-specific serine/threonine protein kinase 6 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi412g00019 Sebi-Chr412 310231 311565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi412g00019 1 443 CBL-interacting serine-threonine protein kinases AT5G58380 60.965 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi412g00019 Pkinase 3.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi412g00019 K07198 - gmx:100816254 748.043