Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi411g00003 ATGGAGTACCCGTCTAGCGGAGTATGGACTCCATTGGGGTCACAATTGCCGCTTATACCAGGAAATTGTTTGGAAATCCGCTTTGCAATTTGGTCTCACACCAATACAGTGCTATTTTTAACAGACCCCCACACTTTCAAATGCATAGAAACTGAAGGGATTTTCCAAGAGTTCCGAGATTTCATAATATCATCCCTTAGCAGCCCACATTTTGGCTTTCTATCTGTCCAACAAGCAACAGATGTGGCCATGTCTGCAATTCAACAAGGGTTCCAGCTTGACCACAACCTTGCTAATGCTAATTATGAATCATTACCCCAATCCCAGGAGTACTTATCTTTACTTTTGGGAGTCAGGCTACCTGAACCTACTTATACACATATCAGAATGGTTCCTGCATCTAAGGAAGCCATAAAAATGTCACTGAAGAAAGTTAAGGTTACTGAAGAGAATCAGTGTTGTGCTATCTGCATGGAGGAGTTTCAAATCGGTGCTGATGGTAATAACAGGGCAGATGAGGGCTACTCAATGCCCTGTTCTCATGTGTTTCATCCAACCTGTATTCTAAAATGGTTGAACAAGAGTAATACGTGTCCATTGTGTCGCTACCCTTTGCCAACTGTCAATGAAGAGATGAATGATAAGTTGACCTGTTGGACTTTTATTAGTTCTATAATTAGGGCCATTTTTTCTTTTCTCTAA 702 0.4117 MEYPSSGVWTPLGSQLPLIPGNCLEIRFAIWSHTNTVLFLTDPHTFKCIETEGIFQEFRDFIISSLSSPHFGFLSVQQATDVAMSAIQQGFQLDHNLANANYESLPQSQEYLSLLLGVRLPEPTYTHIRMVPASKEAIKMSLKKVKVTEENQCCAICMEEFQIGADGNNRADEGYSMPCSHVFHPTCILKWLNKSNTCPLCRYPLPTVNEEMNDKLTCWTFISSIIRAIFSFL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi411g00003 233 SMART ring_2 154 201 IPR001841 -
Sebi411g00003 233 SUPERFAMILY RING/U-box 143 211 - -
Sebi411g00003 233 ProSiteProfiles Zinc finger RING-type profile. 154 202 IPR001841 -
Sebi411g00003 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 206 - -
Sebi411g00003 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 208 IPR013083 -
Sebi411g00003 233 Pfam Ring finger domain 154 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi411g00003 Sebi-Chr411 123707 124408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi411g00003 126 207 C3H Transcription Factor Family AT3G15740 40.244 4.52e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi411g00003 - K22378 ccaj:109804929 108.227