Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi410g00057 ATGGAAGGAGGATCAGAGAAGTCGAATTGTGTATACAGAGAGTGTTTGAGAAACCATGCAGCGAGCCTAGGCAGCTACGCCACCGACGGATGCGGCGAGTTTACGGTGGAGGAGATGTCACCGGGAGGGCTACAATGCGCGGCGTGTGGGTGTCATCGCAACTTCCACCGGAAAGTGAAGTACCCGGCGGCGGTGATGGAGTACGGTACTGGTGAAGGAATCAGGGCAATTGAGGGAGGAGAGAGGAGTAGTGGGAGTGGGAAGAAGAGGTTCAGGTCAAAGTTCAGTGCAGATCAGAAGGAGAAGATGCTGGGTTTCGCAGAGAAGCTTGGGTGGAAGTTACAAAGGAAGGATCTGGATGATGAAATAGAGAGGTTCTGCCGAAGTATTGGAGTGAGCAGACAAGTGTTCAAAGTGTGGATGCATAATCATAAGAACTCTTCCTCTTCTAATTCTTCCGCATCTACTGGCAATGTCTCCTCTCTCACCCAGCAGTAA 498 0.51 MEGGSEKSNCVYRECLRNHAASLGSYATDGCGEFTVEEMSPGGLQCAACGCHRNFHRKVKYPAAVMEYGTGEGIRAIEGGERSSGSGKKRFRSKFSADQKEKMLGFAEKLGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSNSSASTGNVSSLTQQ 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi410g00057 165 FunFam Zinc-finger homeodomain protein 2 77 150 - -
Sebi410g00057 165 NCBIfam homeobox domain, ZF-HD class 88 146 IPR006455 -
Sebi410g00057 165 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 59 IPR006456 -
Sebi410g00057 165 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 12 58 IPR006456 -
Sebi410g00057 165 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 147 - -
Sebi410g00057 165 MobiDBLite consensus disorder prediction 144 165 - -
Sebi410g00057 165 Pfam ZF-HD protein dimerisation region 10 59 IPR006456 -
Sebi410g00057 165 SUPERFAMILY Homeodomain-like 79 146 IPR009057 -
Sebi410g00057 165 Gene3D - 75 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi410g00057 Sebi-Chr410 631044 631541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi410g00057 12 147 ZF-HD Transcription Factor Family AT4G24660 43.452 1.53e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sebi410g00057 ZF-HD_dimer 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi410g00057 - - ccaj:109799743 231.491