Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi410g00053 ATGGCATCAAGGAAATCTCAGGGCGTTTGTTACGGTGACCCCGAAAGTACACGCGGTGGATCATGGGCGGCAATTTGGTGGTACGTTGCGTGGAAGCATTTCATTTTGATATGGGCAGTGTACTCGTCGTTCTTCACTCCGATGGAGTTTGGTTTCTTCAGAGGCTTGCCGGAGAAGATCTTCCTCCTAGACATTGCAGGTCAATTGGCTTTCCTCATAGACATTGCGGTGCGCTTTCGTCGGCTATCGCGACCACACTCCTACTGCGTCGTCTATGACCGCACTCAAATTGCCATCAGATACCTCAAGTCTCGCTTCATTCTTGATCTTCTCGGCTGCTTCCCCTGGGATTATATTTACAAGGTTAGTGGGAGGAAAGAGGTGGTGAGATATCTGCTGTGGATCAGGCTAAGCCGAGCTTTCAGAGTAACCGAATTTTTCGAGAGGATGGAGAAAAACATAAGAGTGAATTACCTGTTTACCAGAATTGCGAAACTTCTGGTTGTTGAACTTTACTGCACACATACGGCTGCATGCATCTTCTACTATCTGGCAACCACCATGCCACCCTCAAAGGAAGGTTACACCTGGATTGGCTCCTTGAAGATGGGTGACTATGCCTACTCTGACTTCAGACACATCGATCTCTGGAAGCGTTACATCACATCACTCTACTTTGCGATTGTTACCATGGCAACTGTTGGCTATGGAGACATTCATGCAGTCAATGTGAGAGAAATGATATTCATCATGATTTATGTCTCCTTTGACATGATTCTCGGCGCTTACCTTCTCGGCAATATGACCGCATTGATTGTCAAGGATCAAAAACAGAGAGATCACTTGCGCTTGCAGTATGATCGCAGTTACGCTGACCCTTCTGTTCTTCACCATATCCCAACCACCATCCGCACACAGATTTCAATAACGTTGTATGAGCAGTTCATTCAGAAAGTTCCTCTTTTCAAGGGATGCTCTTCAGGGTTTATTAAGCAGATTGCAACCAAAGTCCATGAAGAGTTTTTCCTCCCAGGAGAATTGGTTATGGAGCAAGGAGATGTAGCAGATCAACTTTACTTTGTATATCAGGGTGAGCTGCATGAGATTACTAGGGAAGATGGTGATACAGAAGAGACAATCATATTGCACACCTATAGTACCTTTGGCGAAGTTTCTTTTCTTTGCAATATGCCTGAAACTTCCATAGTTCAGGCCCATGAATTTTGCAAGGTTTTGCGTCTCGATAAGAAATCGTTTACAGATATACTGAAGATATTCTTCTTAGATGGTCGCACTATCTTCAACAATCTCATTGAGGTAAAAGACTCTAGCATTCAGCGTAAGCTTTTGGAATCAGACTTCAACCTGACTATAGGAAACCAGGAAACAGAGCTAGCTATGAGGATGAACTGTGCTGCCTATGATGGTCACCTTGACCTTTTGAAAGGTTTGATTGGATCAGGGGCAGATCCCAATAAGACTGATTATGATGGCAGATCACCCTTGCATATCTCAGCATCAAAAGGATATGTAGATATTTCTCATTTTCTTGTTGAACAAGGAGTAAATATCAATTTGCAGGAGTTGGACCTTTTAAAAAGGGTTCTGGCTTGTGGAATTAATCCAAATGCCAAAAATTATGATCAGCGTACACCTCTTCACATAGCTGCCTCTGAAGGTTTGTATACAATAGCTGAATTACTTGTAGAAGCAGGAGCAAGTGTTTTATCAAAGGACAGATGGGGAAATACACCGCTTCATTGTGCTCGTACAGGTGGAAATAGAAATATGATCAAAATGCTTGATGTTGCAAAAGTCTCTCTCAGCTGA 1830 0.4328 MASRKSQGVCYGDPESTRGGSWAAIWWYVAWKHFILIWAVYSSFFTPMEFGFFRGLPEKIFLLDIAGQLAFLIDIAVRFRRLSRPHSYCVVYDRTQIAIRYLKSRFILDLLGCFPWDYIYKVSGRKEVVRYLLWIRLSRAFRVTEFFERMEKNIRVNYLFTRIAKLLVVELYCTHTAACIFYYLATTMPPSKEGYTWIGSLKMGDYAYSDFRHIDLWKRYITSLYFAIVTMATVGYGDIHAVNVREMIFIMIYVSFDMILGAYLLGNMTALIVKDQKQRDHLRLQYDRSYADPSVLHHIPTTIRTQISITLYEQFIQKVPLFKGCSSGFIKQIATKVHEEFFLPGELVMEQGDVADQLYFVYQGELHEITREDGDTEETIILHTYSTFGEVSFLCNMPETSIVQAHEFCKVLRLDKKSFTDILKIFFLDGRTIFNNLIEVKDSSIQRKLLESDFNLTIGNQETELAMRMNCAAYDGHLDLLKGLIGSGADPNKTDYDGRSPLHISASKGYVDISHFLVEQGVNINLQELDLLKRVLACGINPNAKNYDQRTPLHIAASEGLYTIAELLVEAGASVLSKDRWGNTPLHCARTGGNRNMIKMLDVAKVSLS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi410g00053 609 Gene3D - 29 274 - -
Sebi410g00053 609 PRINTS EAG/ELK/ERG potassium channel family signature 172 182 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi410g00053 609 PRINTS EAG/ELK/ERG potassium channel family signature 41 48 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi410g00053 609 PRINTS EAG/ELK/ERG potassium channel family signature 220 237 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi410g00053 609 PRINTS EAG/ELK/ERG potassium channel family signature 64 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi410g00053 609 PRINTS EAG/ELK/ERG potassium channel family signature 264 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi410g00053 609 SUPERFAMILY Voltage-gated potassium channels 27 276 - -
Sebi410g00053 609 ProSiteProfiles cAMP/cGMP binding motif profile. 321 423 IPR000595 -
Sebi410g00053 609 ProSiteProfiles Ankyrin repeat profile. 497 529 IPR002110 GO:0005515
Sebi410g00053 609 SUPERFAMILY cAMP-binding domain-like 290 437 IPR018490 -
Sebi410g00053 609 Gene3D - 529 607 IPR036770 -
Sebi410g00053 609 Pfam Cyclic nucleotide-binding domain 341 424 IPR000595 -
Sebi410g00053 609 Pfam Ion transport protein 30 278 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi410g00053 609 PANTHER POTASSIUM CHANNEL AKT1 527 602 IPR045319 GO:0005249|GO:0006813
Sebi410g00053 609 Gene3D - 457 528 IPR036770 -
Sebi410g00053 609 Pfam Ankyrin repeats (3 copies) 530 601 IPR002110 GO:0005515
Sebi410g00053 609 ProSiteProfiles Ankyrin repeat profile. 548 580 IPR002110 GO:0005515
Sebi410g00053 609 ProSiteProfiles Ankyrin repeat region circular profile. 497 528 - -
Sebi410g00053 609 Gene3D Jelly Rolls 292 453 IPR014710 -
Sebi410g00053 609 SUPERFAMILY Ankyrin repeat 419 601 IPR036770 -
Sebi410g00053 609 PRINTS Ankyrin repeat signature 498 513 IPR002110 GO:0005515
Sebi410g00053 609 PRINTS Ankyrin repeat signature 564 578 IPR002110 GO:0005515
Sebi410g00053 609 CDD CAP_ED 321 423 IPR000595 -
Sebi410g00053 609 FunFam Potassium channel KAT2 309 444 - -
Sebi410g00053 609 ProSiteProfiles Ankyrin repeat region circular profile. 548 580 - -
Sebi410g00053 609 SMART ANK_2a 581 608 IPR002110 GO:0005515
Sebi410g00053 609 SMART ANK_2a 497 526 IPR002110 GO:0005515
Sebi410g00053 609 SMART ANK_2a 464 493 IPR002110 GO:0005515
Sebi410g00053 609 SMART ANK_2a 429 458 IPR002110 GO:0005515
Sebi410g00053 609 SMART ANK_2a 548 577 IPR002110 GO:0005515
Sebi410g00053 609 Pfam Ankyrin repeats (many copies) 472 518 IPR002110 GO:0005515
Sebi410g00053 609 SMART cnmp_10 321 438 IPR000595 -
Sebi410g00053 609 FunFam Potassium channel SKOR 29 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi410g00053 Sebi-Chr410 585485 590442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi410g00053 27 580 Ion Channels AT5G37500 53.763 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi410g00053 K21867 - cave:132185413 800.431