Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi410g00052 ATGGTAATTGGACAAGTTTGCTTACATCAAAGCTATTGCATCCGAGCCTCCGCCGCCATCGGCCCCAACGACATCGAAAAGCTTCACGTTCTTGGCCACGGCAACGGCGGCACCGTCTACAAAGTTCGCCACAAGCGCACCTCTGCTGTGTACGCTCTCAAGATCATCCACGCAGACTCCGACCCCGTCACCCGAAGCCAGATCCGACGAGAAATGGACATCCTCCAGCGAACCGACTCTCCTCACGTGGTCCAGTACCATGGCTTCTTCGAGATAGCCTCTGGCGATGTGGCGATCGTGATGGAGTACATGGATTTGGGGACTCTGGAAACGATGCTGAAGAAGAAGGGGACGTTCTCGGAAACGCAGCTGGCAGGGGTGGCGCGTCAGGTGCTGAGCGGGCTGAGGTACCTCCACTCGCACAAGATCATACACAGGGACATCAAGCCATCGAACCTTCTAGTAAACGGGAAGATGGAGGTGAAGATTGGGGACTTTGGTGTGAGCAAGGTGATGTGCAGGACTGTGGATGGGTGCAATTCATATGTGGGAACCTGCGCCTACATGAGTCCGGAGCGGTTCAACCCGGATTCGAATGGCGGGAACTATAACGGGTATGCGGGGGATATTTGGAGCTTGGGTTTGACCCTGTTTGAGCTCTATGTGGGTCACTTCCCCTTCCTTCGGGTGGGCCAGAGAGCCGACTGGGCCACCCTTATGTGCGCCATTTGTTTCGGGGATCCCCCCACCTTGCCACCAGAGGCTGCGTCGGCAGAGTTTCGGAGTTTCATTGGGTGTTGCTTGAATAAGGACTCCAATCAGCGCTGGACCGCATCTCAGCTCTTGACCCACCCTTTCCTCACTACTCACTAG 873 0.5578 MVIGQVCLHQSYCIRASAAIGPNDIEKLHVLGHGNGGTVYKVRHKRTSAVYALKIIHADSDPVTRSQIRREMDILQRTDSPHVVQYHGFFEIASGDVAIVMEYMDLGTLETMLKKKGTFSETQLAGVARQVLSGLRYLHSHKIIHRDIKPSNLLVNGKMEVKIGDFGVSKVMCRTVDGCNSYVGTCAYMSPERFNPDSNGGNYNGYAGDIWSLGLTLFELYVGHFPFLRVGQRADWATLMCAICFGDPPTLPPEAASAEFRSFIGCCLNKDSNQRWTASQLLTHPFLTTH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi410g00052 290 ProSiteProfiles Protein kinase domain profile. 25 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi410g00052 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Sebi410g00052 290 SUPERFAMILY Protein kinase-like (PK-like) 23 288 IPR011009 -
Sebi410g00052 290 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 22 288 - -
Sebi410g00052 290 Gene3D Transferase(Phosphotransferase) domain 1 107 290 - -
Sebi410g00052 290 SMART serkin_6 25 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi410g00052 290 Gene3D Phosphorylase Kinase; domain 1 7 105 - -
Sebi410g00052 290 CDD PKc_MAPKK_plant_like 23 288 - -
Sebi410g00052 290 Pfam Protein kinase domain 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi410g00052 290 FunFam Mitogen-activated protein kinase 2 106 290 - -
Sebi410g00052 290 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi410g00052 Sebi-Chr410 575609 577161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi410g00052 19 287 MAP Kinase Kinase Gene Family AT1G73500 63.704 2.86e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Sebi410g00052 Pkinase 7.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi410g00052 K20604 - qsu:112003150 448.743