Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi410g00049 ATGAGCTTGCAGCGGAGGGATAGGTACAGTCACAGGGTTCCTCGTCAACAATGGATTCCTAGAGCATCCAATAGTGAGCTGCAGCAGTTAGATGAGAAGAACGGTGGTGATGTTGGTTCCTCTGCCCATACAAGTGGAAGGAGTGGTCGTGCTTTCAGGAACCGTGAAGATTTACCTCAGCTTCTACAAGAGATTCAGGACAAGCTCACCAAAGGCGCTGTCGAATGCATGATTTGCTATGACGCCGTGCGGAGGTCTGCGCCTATCTGGTCATGCTCTAGTTGCTACTCTATCTTTCACCTTAATTGTATAAAGAAGTGGGCTCGAGCACCCTCTTCCATTGCAGATGCAGACATGAATCGAGGCTTTAATTGGCGCTGCCCTGGTTGTCAATCTGTGCAACTCACATCATCCAACCACATTCGGTATCTTTGCTTCTGTGGCAAGACCCCAGACCCACCATCCGACTTGTATCTCACGCCACATTCCTGTGGAGAATCCTGTGGGAAGCCTCTTGAGAAACCCCAACCTGATAAGGAGAATCTTTGCCCTCATCTTTGCGTTTTGCAATGCCATCCGGGTCCTTGTCCTCCTTGCAAAGCTTTTGCTCCACCACGCCTTTGTCCTTGTGGGAAGCAAAATATCACCACTCGATGCTCTGACCGCCATTCTCTCATTACTTGTGGTCAAAACTGCGATAAGCTTCTTGAATGTGGGCGTCATAGGTGTGACCGAATTTGTCATCTGGGTCCCTGTGATCCTTGTCGTGTCCCAATCAATGCCTCTTGCTTTTGCAGCAAACAGATGGAGGTTATTCTCTGTGGGGACATGGCTGTGAAGGGTGAAATCAGAGCACAAGGTGGAGTTTTTTCTTGTGGTTCCACTTGTGGAAAGAAGCTTGGTTGTGGTAATCATATCTGTATTGAGACTTGTCATCCAGGTATCTGTGCCGAGTGTGACTTGTTGCCAGCCCGTATTAAGACATGCTGTTGTGGGAAAACTAGATTGAAGGAGGAACGCCAGAGTTGTTTAGACCCAATACCTACCTGTTCAAAGGTATGTGGCAAGTCACTTCCTTGCAGGATGCATCATTGTAAAGAGGCGTGTCATGCTGGGGATTGTTCTCCTTGTATGGTTCTAATCTCTCACAAGTGTCGATGTGGCTCAACTTCTCGAACCGTGGAGTGCTATAAGACAACGATGGAGGATGAGAAATTTACTTGTGAAAAGCCTTGTGGGCGGAAAAAGAGTTGTGGAAGGCATCGATGTAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAGTATGCCAAGTTCGGATTGGGATCCACACTTGTGTTCCATCCCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCCTGTGAATCCCTGTGTCACAGTGGTCATTGTCCACCTTGCCTTGAAACTATATTCACTGATTTGACATGTGCCTGTGGCGGGACTTCAATCCCACCTCCATTGCCTTGTGGTACACCACTTCCCTCATGTCAGCTTCCATGTTCACTTCCTCAACCTTGTGGCCATCCAGCCTCCCACAGCTGCCATAATGGAGACTGTCCTCCTTGTTTAGTGCCCGTAGCAAAAGAATGTATTGGTGGACATGTACTTCTTAGAAACATACCTTGTGGTTCAAAGGATATTAGATGTAATAAGCTCTGTGGTAAGACCAGACAGTGCGGCTTACATGCTTGTGGCAGAACATGTCACCCTTCACCTTGTGATAATCAGTCTGCTGAGCAAGGTATCCAATCATCTTGTGGACAAACATGTGGTGCTCCAAGGAGAGACTGTCGGCATACATGTGCAGCTCCTTGTCATCCTTCATCTCCATGCCCAGATATAAGATGTGAATTCCCTGTCACAATTACTTGTTCTTGTGGCCAAATAAGAGCAAATGTTCCTTGTGATGCTGGTGATAGCAATTCTGATGCCATACATGAAACTTCCATCATTCAAAAGTTGCCTGTGCTTCTTCAACCGGTGGATGCAAATGGCAAAAAAGTTCCCCTTGGACAAAGAAAACTGATGTGTAACGAGGAGTGCGCTAAGTTGGAGCGGAAAAGGGTTCTTGCAGATGCTTTTGAGATTAACACTCCCAATCTAGATTCTCTCCATTTTGGTGAGAATTCTGTTGCATCTGAATTGCTTGCTGATATGATGAGACGCGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAATTCTTAGTACTAGGCAAGAGCAAAAGAACTACACATGGTCTAAAAGTCCATGTTTTCTGTCCCATGCTAAAGGATAAGAGAGATGCAGTGATGGTGATTGCTGAGAGATGGAAGCTTGCAGTGAATGCAGCTGGGATGAAACTGGACGATGGCGGTCGTTCGCGTTCCCGTTTCTGCTCCGATGAACGAACGGCCCGTCGCCGGTGGCTGAGCTTTGCGGAAGAGACGACGCGAGGGAGAGATGCGACCACGAGAGGCGCCCTCTGTGATCTCAGACTCCGCTGCGGCCACCTTCGCCACACACGGCAGCGTCCTCGGGAGGCACAGCATGGTGCGAGGATGATGGGAGCAAAACCTCTAGGATGGGGATCTGATTCCGGGGCCGCCGGAGGTATGTGCGACGGCACGGTCACGGTGGGAGTTGTTGCGACAGTCACAACGCATTACACTATTCAGAATGGTTCGCTCTTGTGGCTTTCTCGCCGTTGA 2715 0.4843 MSLQRRDRYSHRVPRQQWIPRASNSELQQLDEKNGGDVGSSAHTSGRSGRAFRNREDLPQLLQEIQDKLTKGAVECMICYDAVRRSAPIWSCSSCYSIFHLNCIKKWARAPSSIADADMNRGFNWRCPGCQSVQLTSSNHIRYLCFCGKTPDPPSDLYLTPHSCGESCGKPLEKPQPDKENLCPHLCVLQCHPGPCPPCKAFAPPRLCPCGKQNITTRCSDRHSLITCGQNCDKLLECGRHRCDRICHLGPCDPCRVPINASCFCSKQMEVILCGDMAVKGEIRAQGGVFSCGSTCGKKLGCGNHICIETCHPGICAECDLLPARIKTCCCGKTRLKEERQSCLDPIPTCSKVCGKSLPCRMHHCKEACHAGDCSPCMVLISHKCRCGSTSRTVECYKTTMEDEKFTCEKPCGRKKSCGRHRCSERCCPLSNPNSMPSSDWDPHLCSIPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGGTSIPPPLPCGTPLPSCQLPCSLPQPCGHPASHSCHNGDCPPCLVPVAKECIGGHVLLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPSPCDNQSAEQGIQSSCGQTCGAPRRDCRHTCAAPCHPSSPCPDIRCEFPVTITCSCGQIRANVPCDAGDSNSDAIHETSIIQKLPVLLQPVDANGKKVPLGQRKLMCNEECAKLERKRVLADAFEINTPNLDSLHFGENSVASELLADMMRRDPKWVLSVEERCKFLVLGKSKRTTHGLKVHVFCPMLKDKRDAVMVIAERWKLAVNAAGMKLDDGGRSRSRFCSDERTARRRWLSFAEETTRGRDATTRGALCDLRLRCGHLRHTRQRPREAQHGARMMGAKPLGWGSDSGAAGGMCDGTVTVGVVATVTTHYTIQNGSLLWLSRR 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi410g00049 904 CDD NF-X1-zinc-finger 292 335 - -
Sebi410g00049 904 CDD NF-X1-zinc-finger 446 498 - -
Sebi410g00049 904 ProSitePatterns Zinc finger PHD-type signature. 76 130 IPR019786 -
Sebi410g00049 904 ProSiteProfiles Zinc finger RING-type profile. 76 131 IPR001841 -
Sebi410g00049 904 SUPERFAMILY RING/U-box 75 136 - -
Sebi410g00049 904 CDD NF-X1-zinc-finger 228 276 - -
Sebi410g00049 904 MobiDBLite consensus disorder prediction 31 48 - -
Sebi410g00049 904 SMART znfxneu3 604 625 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 SMART znfxneu3 183 201 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 SMART znfxneu3 566 595 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 SMART znfxneu3 456 475 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 SMART znfxneu3 238 257 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 SMART znfxneu3 360 379 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 SMART znfxneu3 418 448 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 SMART znfxneu3 302 321 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 SMART znfxneu3 513 531 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 CDD NF-X1-zinc-finger 350 398 - -
Sebi410g00049 904 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 28 788 IPR034078 GO:0003700
Sebi410g00049 904 Pfam NF-X1 type zinc finger 566 581 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 Pfam NF-X1 type zinc finger 418 429 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 Pfam NF-X1 type zinc finger 185 200 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 Pfam NF-X1 type zinc finger 302 319 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 Pfam NF-X1 type zinc finger 456 473 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 Pfam NF-X1 type zinc finger 513 529 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 Pfam NF-X1 type zinc finger 238 256 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 Pfam NF-X1 type zinc finger 354 377 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 Pfam NF-X1 type zinc finger 597 622 IPR000967 GO:0005634|GO:0008270
Sebi410g00049 904 CDD RING-CH-C4HC3_NFX1-like 75 131 - -
Sebi410g00049 904 MobiDBLite consensus disorder prediction 31 50 - -
Sebi410g00049 904 ProSiteProfiles Zinc finger PHD-type profile. 73 133 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi410g00049 Sebi-Chr410 556305 559858 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Sebi410g00049 zf-NF-X1 61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi410g00049 K12236 - gmx:106799700 1375.92