Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi410g00016 ATGGATATCGAGGAGGACATTCGTTCTTTACAGCTTGACTCAGCAGAAGACAATAATGGGATGGTAAATCCAGAGGATGGAAAGCCAGAAGTTGAGAAATCTGATGAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCACAGGCTGTTGAAGCTGAGCCCAAAGTGAAAGATAAGGAAATTCCTTCTGTTCAAGAAGAAGAAGAAGAGCCGGAGTTGATGAAAAGACACTTGAATGTTGTGTTTATTGGCCATGTCGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAAAGGACCATCCAAAAATATGAGAAGGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGATACAAATGAGGAGGAGAGGATAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAGACAACGAGGTTCACCATTCTGGATGCACCTGGTCACAAAAGCTATGTTCCTAATATGATAAGTGGTGCTTCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAACATGTCCAGCTTGCAAAAACACTGGGTGTGGCTAAGCTACTTGTTGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGATATGATGAAATTGAGTCAAAGATGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTTGTTTTTACCAATATCGGGGCTTATTGGCTCGAACTTAAAAACGAGATTGGATAAAAGCACTTGTTCATGGTGGGATGGGCCTTGCTTATTTGAAGCCCTTGATGCTGTTGAAGTTCCTTTACGAGATCCCAAAGGCCCATTTAGGATGCCCCTAATTGACAAATTCAAAGACATGGGAACTGTTGTCATGGGCAAAGTGGAATCTGGTACTATTCGCGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCTATATATATTGATGAAGATCGGGTTAAACGTGCTGGACCTGGTGAAAATATACGGGTTAGAATATCTGGTGTTGAAGAAGAAGACATATTATCTGGGTTTATCCTGTGTAGTGTTGCAAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAATTGGCAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTCTTGCAACAAATTGATCCAAAGACAAGGAAGCCTATGAAAAAGAAAGTTCTCTTCGTGAAGAATGGCGCTGTTGTAGTATGCCGTGTTCAGGTTAATAACATGATATGCATTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGGAAAACTGTCGCTGTGGGGAAAGTCACTGGTCTGTGA 1506 0.4163 MDIEEDIRSLQLDSAEDNNGMVNPEDGKPEVEKSDEMDEDPKQEVQAQAVEAEPKVKDKEIPSVQEEEEEPELMKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLIGSNLKTRLDKSTCSWWDGPCLFEALDAVEVPLRDPKGPFRMPLIDKFKDMGTVVMGKVESGTIREGDSLLVMPNKDQVKVVAIYIDEDRVKRAGPGENIRVRISGVEEEDILSGFILCSVANPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTRKPMKKKVLFVKNGAVVVCRVQVNNMICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi410g00016 501 Pfam Elongation factor Tu domain 2 319 386 IPR004161 GO:0005525
Sebi410g00016 501 SUPERFAMILY Translation proteins 298 391 IPR009000 -
Sebi410g00016 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 310 IPR027417 -
Sebi410g00016 501 Gene3D Translation factors 304 389 - -
Sebi410g00016 501 Pfam Elongation factor Tu C-terminal domain 392 500 IPR004160 -
Sebi410g00016 501 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 396 500 IPR009001 -
Sebi410g00016 501 CDD eRF3_C_III 393 501 - -
Sebi410g00016 501 MobiDBLite consensus disorder prediction 26 72 - -
Sebi410g00016 501 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 303 389 - -
Sebi410g00016 501 Pfam Elongation factor Tu GTP binding domain 75 277 IPR000795 GO:0003924|GO:0005525
Sebi410g00016 501 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 55 299 - -
Sebi410g00016 501 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 75 304 IPR000795 GO:0003924|GO:0005525
Sebi410g00016 501 FunFam Putative translation elongation/initiation factor family protein 393 501 - -
Sebi410g00016 501 CDD eRF3_II 306 387 - -
Sebi410g00016 501 CDD EF1_alpha 79 299 - -
Sebi410g00016 501 PANTHER TRANSLATION FACTOR 67 499 - -
Sebi410g00016 501 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
Sebi410g00016 501 Gene3D - 56 299 IPR027417 -
Sebi410g00016 501 PRINTS GTP-binding elongation factor signature 174 185 IPR000795 GO:0003924|GO:0005525
Sebi410g00016 501 PRINTS GTP-binding elongation factor signature 218 227 IPR000795 GO:0003924|GO:0005525
Sebi410g00016 501 PRINTS GTP-binding elongation factor signature 79 92 IPR000795 GO:0003924|GO:0005525
Sebi410g00016 501 PRINTS GTP-binding elongation factor signature 158 168 IPR000795 GO:0003924|GO:0005525
Sebi410g00016 501 Gene3D Translation factors 394 501 - -
Sebi410g00016 501 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi410g00016 Sebi-Chr410 121747 129898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi410g00016 75 496 Eukaryotic Initiation Factors Gene Family AT5G60390 37.647 1.20e-95 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi410g00016 K03267 - gmx:100793653 927.546