Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00116 ATGTCGAGCAGCCATAATCTGAAATGTGATGGCAGCTCATTTCTCATTGACATCACCAGCGCCCTTAGTAAAGTCACTGCCAATTACACCATTAGCAGTGCCAAAAGAAGGTGGCGTTTTGCTTTTATAGCAATCTGTTCCAGAAGGGTCATGCTTTCCCTGGCCAAAGAGGTCATATCCAAAAGAAAACCCCATCATCACTACACCAAACTCTTCCAAACCCAGTCTTCCACTTCTAGCACCACTCTTGATATAATTGAACCCTTAGTTACCCAACCTGTAAGCAATGAAACCAATCATTATACCTTGGTTCCTGATGTTGACAAAGCCAGACTTGCTAATATGGTTAAAGACAAAAACTTGGAAGTCCTTACTGAGTTTGGAGGAGTTGAACGTGTTGCAAATGTTCTTGGAACCATTCCAACAAAGGGAATCCTTGGCAGTGATGATGACATTACCAAACGACGTGAGTTGTTTGGTTCAAACACTTACCAGAGGCCACCACCCAAAATCTTCCTACACTTTGTGCTGGAAGCTTTCAATGACACCACTATTCTCATCCTTCTTGTTTGTGCTGGCCTTTCCCTTGGTTTTGGCATAAAAGAACATGGACCAGGGGAAGGCTGGTATGAAGGAGGGAGTATATTTGTAGCAGTTTTTCTGGTGGTGGTAGTCAGTGCACTCAGCAACTACAGACAAGAAAGACAATTTGACAAATTGTCCAAGATAAGTAACAACATCAAAGTTGAAGTTGTGAGAAATGGAAGGCCACAACAGATATCCATCTTTGAGGTTCTTGTGGGAGATATTGTATCTCTTAAGATTGGTGATCAAATTCCAGCTGATGGATTGTTCTTAGTTGGCCATTCCTTGCAAGTAGATGAATCTAGTATGACAGGTGAGAGCGACTATGTAGAAATTGAGCCATTAAAAAGCCCATTCTTGTTGTCTGGTGCAAAGGTAGTGGATGGCTATGCTCAAATGCTTGTTACATCCGTGGGAACCAACACAGCATGGGGTCAAATGATGAGCTCAATAACCGGAGACACCAAGGAAAGAACACCATTACAAGCTCGTCTTGACAAGTTAACCTCTTCTATTGGAAAGGTTGGCCTTGCAGTTGCATTTTTGGTTCTCCTAGTGTTGTTAATTCGTTATTTCACTGGAAACTCACAAGATAAGTATGGGAATACAGAGTTCAATGGAAGCAAAACTGATATAAATGATGTGTTCAATGCTGTTGTGCGTATTGTTGCAGCTGCAGTCACTATTGTGGTTGTGGCAATCCCTGAGGGTCTGCCATTGGCTGTCACTCTCACTCTGGCTTACTCCATGAAAAGAATGATGGCAGACCATGCAATGGTGAGGAAACTTTCAGCTTGTGAAACAATGGGGTCAGCAACAGTCATATGCACAGATAAAACTGGGACTTTGACATTGAATCAGATGAGAGTAACCAAGTTTTGGTTAGGCCTAGAAAATGTTATGGAAAATTTTTCCAATGCAATGGCCCCAAATGTTCTTGAATTATTCCACCAGGGAGTTGGACTCAATACAACTGGAAGTGTCTATAAGCCTTCATCAGTATCCGAACCTGAAATTTCAGGTAGTCCAACAGAGAAAGCTATTCTTTTGTGGGCAGTATCAGATTTAGGTATGGACATGGATGAACTGAAACAGAAACATACAGTTCTTCATGTTGAAACATTTAACTCAGAGAAGAAACGAAGTGGCGTGGCAATAAGGAAGGAGACAAACAACACAGTTCACGTGCATTGGAAAGGAGCTGCTGAGATGATACTTGCAATGTGTTCTAATTATATTGATAGTAATGGCACAAGGAAGTCCCTTGATGAAGAAAGGAGTAAACTTGAGAAGATAATTCAAGGCATGGCAGCTAGTAGCCTACGATGTATTGCTTTTGCTCACATGGAGATATCAGAAGACATTGATTATAGTGATAAGGAAAAAGCACATGAAATCCTAAGAGAAAATGGCTTGACCTTGCTTGGAATTGTTGGCCTCAAGGATCCATGCAGACCTGACGTTAAGAAAGCTGTGGAAACTTGCAAACTTGCAGGAGTTGATATTAAGATGATCACTGGAGATAACATATTTACTGCAAAGGCAATAGCAACGGAATGTGGAATATTAGATCTTAACGATTGTGCAAATGTAGGAGAAGTGGTGGAAGGTGTTGAATTCCGAAACTATACAGAGGAAGAGAGAATGGAGAAAGTTGACAAAATCCGTGTAATGGCAAGATCATCTCCTTTGGACAAACATTTGATGGTGCAATGTTTAAGAAAGAAAGGCCATGTAGTTGCAGTCACTGGAGATGGTACAAATGATGCACCTGCTCTAAAAGAAGCTGATATAGGACTTTCTATGGGGATCCAAGGCACTGAGGTTGCTAAGGAAAGCTCTGATATTGTTATCTTGGATGACAACTTCAATTCTGTTGCCACTGTTTTAAGGTGGGGACGGTGTGTTTATAACAACATCCAGAAATTTATCCAGTTTCAACTAACAGTGAATGTTGCAGCTCTTGTGATAAATTTTATTGCAGCAGTTTCTTCTGGGGATGTTCCCTTAACAACAGTTCAACTACTATGGGTGAATCTCATTATGGATACTCTAGGTGCTCTGGCACTGGCTACAGAACGACCTACAAAGGAGTTAATGCAGAAAAGACCAATAGGTAGAACAGAACCTCTTATTACTAGCATCATGTGGAGAAACCTTTTAGCTCAAGCTTTGTATCAGATTGCTGTTCTGTTGGTTTTACAGTTCTATGGAAAGTCAATCTTCAATGTAAGTAAGGAGGTAAAGGATACTCTAATCTTTAATACTTTTGTTCTCTGCCAAGTTTTCAACGAGTTCAACTCAAGAAGTATGGAGAAACTTAATGTATTCGAAGGCATTCACAAAAACCACCTGTTTCTTGGAATTGTGGGGATTACTATTGTTCTTCAAATCATGATGGTGGAATTCCTAAGGAAGTTTGCTGATACAGAGAGATTAACATGGATGCAATGGGGAATTTGTATTGTGATTGCAGCTCTGTCATGGCCAATTGCTTGGTTAATAAAGCTCATACCTGTTTCAAACAAACCGTTCTTCAGCTATACTAAGTGGGTAAAATTATTAGTCTTCAAGACTAAGCAGGCTTTTTTATCATGA 3183 0.4046 MSSSHNLKCDGSSFLIDITSALSKVTANYTISSAKRRWRFAFIAICSRRVMLSLAKEVISKRKPHHHYTKLFQTQSSTSSTTLDIIEPLVTQPVSNETNHYTLVPDVDKARLANMVKDKNLEVLTEFGGVERVANVLGTIPTKGILGSDDDITKRRELFGSNTYQRPPPKIFLHFVLEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVSALSNYRQERQFDKLSKISNNIKVEVVRNGRPQQISIFEVLVGDIVSLKIGDQIPADGLFLVGHSLQVDESSMTGESDYVEIEPLKSPFLLSGAKVVDGYAQMLVTSVGTNTAWGQMMSSITGDTKERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSQDKYGNTEFNGSKTDINDVFNAVVRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLENVMENFSNAMAPNVLELFHQGVGLNTTGSVYKPSSVSEPEISGSPTEKAILLWAVSDLGMDMDELKQKHTVLHVETFNSEKKRSGVAIRKETNNTVHVHWKGAAEMILAMCSNYIDSNGTRKSLDEERSKLEKIIQGMAASSLRCIAFAHMEISEDIDYSDKEKAHEILRENGLTLLGIVGLKDPCRPDVKKAVETCKLAGVDIKMITGDNIFTAKAIATECGILDLNDCANVGEVVEGVEFRNYTEEERMEKVDKIRVMARSSPLDKHLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMQKRPIGRTEPLITSIMWRNLLAQALYQIAVLLVLQFYGKSIFNVSKEVKDTLIFNTFVLCQVFNEFNSRSMEKLNVFEGIHKNHLFLGIVGITIVLQIMMVEFLRKFADTERLTWMQWGICIVIAALSWPIAWLIKLIPVSNKPFFSYTKWVKLLVFKTKQAFLS 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00116 1060 Pfam Cation transporter/ATPase, N-terminus 128 195 IPR004014 -
Sebi40g00116 1060 SFLD Haloacid Dehalogenase 453 831 - -
Sebi40g00116 1060 Pfam E1-E2 ATPase 247 449 - -
Sebi40g00116 1060 FunFam Calcium-transporting ATPase 795 1037 - -
Sebi40g00116 1060 SUPERFAMILY HAD-like 469 883 IPR036412 -
Sebi40g00116 1060 ProSitePatterns E1-E2 ATPases phosphorylation site. 473 479 IPR018303 -
Sebi40g00116 1060 SFLD p-type atpase 453 831 IPR044492 -
Sebi40g00116 1060 SUPERFAMILY Calcium ATPase, transmembrane domain M 127 1036 IPR023298 -
Sebi40g00116 1060 CDD P-type_ATPase_Ca_PMCA-like 152 911 - -
Sebi40g00116 1060 FunFam Calcium-transporting ATPase 481 678 - -
Sebi40g00116 1060 PRINTS H+-transporting ATPase (proton pump) signature 624 642 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi40g00116 1060 PRINTS H+-transporting ATPase (proton pump) signature 778 794 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi40g00116 1060 PRINTS H+-transporting ATPase (proton pump) signature 810 835 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi40g00116 1060 SMART Cation_ATPase_N_a_2 126 200 IPR004014 -
Sebi40g00116 1060 FunFam Calcium-transporting ATPase 673 823 - -
Sebi40g00116 1060 Gene3D - 468 823 IPR023214 -
Sebi40g00116 1060 Gene3D - 481 678 IPR023299 GO:0000166
Sebi40g00116 1060 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 478 675 IPR023299 GO:0000166
Sebi40g00116 1060 PANTHER CATION TRANSPORTING ATPASE 92 1036 - -
Sebi40g00116 1060 SUPERFAMILY Calcium ATPase, transduction domain A 246 345 IPR008250 -
Sebi40g00116 1060 Pfam Cation transporting ATPase, C-terminus 863 1033 IPR006068 -
Sebi40g00116 1060 NCBIfam calcium-translocating P-type ATPase, PMCA-type 118 1035 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sebi40g00116 1060 PRINTS P-type cation-transporting ATPase superfamily signature 671 682 - -
Sebi40g00116 1060 PRINTS P-type cation-transporting ATPase superfamily signature 294 308 - -
Sebi40g00116 1060 PRINTS P-type cation-transporting ATPase superfamily signature 778 797 - -
Sebi40g00116 1060 PRINTS P-type cation-transporting ATPase superfamily signature 471 485 - -
Sebi40g00116 1060 PRINTS P-type cation-transporting ATPase superfamily signature 693 703 - -
Sebi40g00116 1060 PRINTS P-type cation-transporting ATPase superfamily signature 802 814 - -
Sebi40g00116 1060 Pfam haloacid dehalogenase-like hydrolase 469 792 - -
Sebi40g00116 1060 Gene3D - 178 1032 - -
Sebi40g00116 1060 Gene3D - 148 347 - -
Sebi40g00116 1060 FunFam Calcium-transporting ATPase 224 347 - -
Sebi40g00116 1060 NCBIfam HAD-IC family P-type ATPase 749 858 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi40g00116 1060 NCBIfam HAD-IC family P-type ATPase 413 495 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00116 Sebi-Chr40 2449828 2453010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00116 34 1045 Primary Pumps ATPases AT3G63380 70.484 0.0 1389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00116 K01537 - gmx:100790034 1748.79