Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00115 ATGTTCCCCACAGTTATTTCCAATTCTACTACTTCTTTGTCTGAAGATGCCAGTGTCTCTTCTGTTACAAGAGTTCAAGACTTGGTTGGACTCAATCATCTGCTCTCTCCTCAGCAACAACCTCAAAAGATCAAGAAAAAAAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAGGTGATTGCTTTATCCCCAAAGGCCCTTCTAGCTACTAATAGATTTGTGTGTGAGATCTGCCATAAGGGTTTCCAGAGAGATCAGAATCTACAGCTTCATAGGAGGGGACATAACCTGTCATGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAGAAGAAAGTATATGTTTGCCCTGAACCTTCTTGTGTTCACCACAACCCTTCAAGGGCTTTAGGGGATCTTACAGGAATTAAGAAACACTATTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGAGGATATATGTTTGGTTTTACATAAGAATGGCAATGATGAAGATTGTAAGAAAAATAGAAGTGTAAAGTTGCAACATTGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGAGTCTCAGCAAACCAATTAGCCATCACTGCAACAAACCCATTAGTTCACTCTCTCTTTCTCTTCCAAACCCAAACACAACCCAATTTTCATAACAACAACCACTTCACTACTCCCTCATGGGACTCATCATCATCACAACAAAACCCTAACCCTATCAAGCCAGAGCTTCAAACCTTCCACGTGTCCTCCTCCAACGCAGCCACGTCAGCAGCATACATGTCAGCCACTGCCCTCCTTCAAAAGGCTGCAACCGTCGGTGCCGCTGCCATCACGGGCCCACCCTCTGCTTCTGTTGGTGTCGGGTCAATGACTCACCTCAATATGACCGAGTTTGGAACGGTGAGTCATCATCAACTCGACTCGGTGGTACTGCCTGAGCCTGAGTACATGACCATGGCACGGAACCATAACCTCACTAGAGACTTTCTGGGGATAACGGGAGATGCCAACGGGGGAGTTAACGGCGCCTCAGTTGACGTTAGCATGAACGTGAAGGATATGCTAACCTTCACGGGGGGCGTAGACATTCATCACCACCACCACGCGCTGTTGAAGCCACAACAAGGTTTTGAATTCCTTGGGACAGCCACTGCCCCGGAAACGTGGGGGAATTGTTGA 1275 0.4627 MFPTVISNSTTSLSEDASVSSVTRVQDLVGLNHLLSPQQQPQKIKKKRSLPGNPDPDAEVIALSPKALLATNRFVCEICHKGFQRDQNLQLHRRGHNLSWKLKQRNSKEVKKKVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCEDICLVLHKNGNDEDCKKNRSVKLQHWKDSFITHRAFCDALAEESARVSANQLAITATNPLVHSLFLFQTQTQPNFHNNNHFTTPSWDSSSSQQNPNPIKPELQTFHVSSSNAATSAAYMSATALLQKAATVGAAAITGPPSASVGVGSMTHLNMTEFGTVSHHQLDSVVLPEPEYMTMARNHNLTRDFLGITGDANGGVNGASVDVSMNVKDMLTFTGGVDIHHHHHALLKPQQGFEFLGTATAPETWGNC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00115 424 Gene3D Classic Zinc Finger 55 121 - -
Sebi40g00115 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Sebi40g00115 424 FunFam protein indeterminate-domain 12-like 53 121 - -
Sebi40g00115 424 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Sebi40g00115 424 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Sebi40g00115 424 MobiDBLite consensus disorder prediction 250 273 - -
Sebi40g00115 424 MobiDBLite consensus disorder prediction 36 57 - -
Sebi40g00115 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 377 IPR031140 -
Sebi40g00115 424 SMART c2h2final6 74 96 IPR013087 -
Sebi40g00115 424 SMART c2h2final6 150 170 IPR013087 -
Sebi40g00115 424 SMART c2h2final6 115 145 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00115 Sebi-Chr40 2396074 2398674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00115 11 417 IDZ Gene Family AT4G02670 47.653 2.55e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi40g00115 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00115 K25870 - gmx:100788975 530.791