Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00113 ATGGTTCCTCCTCCAAGGCCAATGGAGGGGCTTCATGACGTAGGACCACCCCCATTTCTCACCAAGACTTTCGATGCAGTGGAGGACCCTACAACTAGCCACATAGTTTCATGGAACAGAGGTGGTGCTAGCTTTGTGGTTTGGGATCCACACACTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGGTTCCTAAGAGGGCATAGGCACTTGTTGGCAAACATAAGGAGAAGAAAGCATCAAAATTCCCAACCTACTTCTTCCCAACAAGCACAAGGTCACTGTGTTGAAGTTGGTCGTTTTGGACTAGATGAAGAGATTGATCGTTTGAGGCGTGACAAGCAAGTGTTAATGATGGAGCTTGTGAAGCTTAGACAGCAGCAGCAGAATACCAGATCCTACCTTCAAACAATGGAAGAAAGGTTAAGAGGGACAGAAATTAAACAGCAACAAATGATGGCTTTCTTAGCTAGAGCAATGAAAAATCCAACCTTTATTCAGCAGTTACTCCAACAAAAGGAGAAGAGAAAGGAGCTTGAAGAAGCAATGACTAAAAAGAGGAGAAGACCAATTGAGCAAGGACCTAGTGGTGTTGTTGGAGAATCAAGCAGTGGTGGTGAAAGAAGGAACAATGTTAAAGTTGAGCCAACAGCATTTGGGGAATTTGGATTTGAAGTGTCAGAGCTAGAAGTGTTAGCAATGGAAATGCAGGGTTTTGGTAGGGGTAGGAGACAACAAGAGGAAGTGGCTGAGGGACTAGAACCTCAAGAGAGGCTGGAAAAAGAACTTGATGAAGGGTTTTGGGAAGAACTCTTCAGTGAGAATTTTGAGGGTGAATTAGACATTCCAACTTCTCATGATGAAGATGAAGATGTCAATGTGCTAGCCAATCGGTTAGGTTACTTAGGTTCAAGTCCTAAGTGA 1014 0.43 MVPPPRPMEGLHDVGPPPFLTKTFDAVEDPTTSHIVSWNRGGASFVVWDPHTFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLANIRRRKHQNSQPTSSQQAQGHCVEVGRFGLDEEIDRLRRDKQVLMMELVKLRQQQQNTRSYLQTMEERLRGTEIKQQQMMAFLARAMKNPTFIQQLLQQKEKRKELEEAMTKKRRRPIEQGPSGVVGESSSGGERRNNVKVEPTAFGEFGFEVSELEVLAMEMQGFGRGRRQQEEVAEGLEPQERLEKELDEGFWEELFSENFEGELDIPTSHDEDEDVNVLANRLGYLGSSPK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00113 337 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Sebi40g00113 337 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 229 IPR027725 -
Sebi40g00113 337 FunFam Heat shock transcription factor 1 12 109 - -
Sebi40g00113 337 Coils Coil 137 157 - -
Sebi40g00113 337 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi40g00113 337 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi40g00113 337 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi40g00113 337 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi40g00113 337 MobiDBLite consensus disorder prediction 206 222 - -
Sebi40g00113 337 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi40g00113 337 MobiDBLite consensus disorder prediction 206 242 - -
Sebi40g00113 337 Gene3D - 12 109 IPR036388 -
Sebi40g00113 337 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi40g00113 337 Coils Coil 199 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00113 Sebi-Chr40 2336761 2338209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00113 5 335 HSF AT3G22830 55.068 4.99e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi40g00113 HSF_DNA-bind 6.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00113 K09419 - gmx:100794264 579.711