Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00109 ATGGAGCAATATGAAATTCTAGAACAGATTGGCAAAGGCTCGTTTGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAAAAGAAAAAGTATGTCCTCAAGAAGATACGCCTTGCTCGCCAAACTGACAGAACCCGTAGGTCTGCTCTGCAGGAGGGTTGTTTTGTATGCATCATCATTGGTTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTAACTTTCCTGAAGAGAAGCTTTGCAAGTGGCTTGTCCAGTTGTTGATGGCACTTGATTACTTACATGCAAATCATATTCTTCATCGTGACGTCAAGTCGGGGGCTAGTCAAAAGTATGCTGCGGAAAATCCAGAGCTTAGGCCAACTGCTGCAGAGTTACTGAATCATCCGCATCTTCAGCCTTACATTCTTAAAATTCACCTAAAATTAAATAACCCCAGAAGAAAGCCAGAATCTGTTTCTGTTCTTTCTGAACATGATAAATGCTTGTCACTAAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAGCTGAACAAAGTTCTCAGTGCTCTACTCAAATGGCCCATGGATTGTCCACTTGTTCAAACGAGAAGATCTATGAATTATCTGTTGGTGGTGTCTGTGATCAATGCAATACTAAAAATTCAAAAGCCACAAAGTCCTCAACTGTTGAGAGAACACCAAGACTGAGAGCAGCTAAAGATTCCGCTGCTGCCAGAAGGCAGACAATGGCACCACCAAAGATATCCGCACTGGTTCAAAGCATGATTCAGTAG 792 0.4255 MEQYEILEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSALQEGCFVCIIIGYCEGGDMAEAIKKANGVNFPEEKLCKWLVQLLMALDYLHANHILHRDVKSGASQKYAAENPELRPTAAELLNHPHLQPYILKIHLKLNNPRRKPESVSVLSEHDKCLSLSNDRALNPSISGAEQSSQCSTQMAHGLSTCSNEKIYELSVGGVCDQCNTKNSKATKSSTVERTPRLRAAKDSAAARRQTMAPPKISALVQSMIQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00109 263 SMART serkin_6 4 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi40g00109 263 SUPERFAMILY Protein kinase-like (PK-like) 2 110 IPR011009 -
Sebi40g00109 263 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 119 240 - -
Sebi40g00109 263 MobiDBLite consensus disorder prediction 220 263 - -
Sebi40g00109 263 Gene3D Phosphorylase Kinase; domain 1 52 62 - -
Sebi40g00109 263 ProSiteProfiles Protein kinase domain profile. 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi40g00109 263 Gene3D Phosphorylase Kinase; domain 1 1 51 - -
Sebi40g00109 263 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Sebi40g00109 263 Pfam Protein kinase domain 55 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi40g00109 263 Gene3D Transferase(Phosphotransferase) domain 1 63 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00109 Sebi-Chr40 2284214 2289483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00109 1 109 AGC Kinase Gene Family AT1G45160 28.571 1.47e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Sebi40g00109 Pkinase 5.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00109 K08857 - zju:107426399 198.364