Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00092 ATGGAAAGCCGCACGAGCAGCAACAACCAGTGGAGAGCTGAGGAAGCCATTGGTGGCAATGCTGAAGCAATTCAAGCCCTCAGAGAACTCATAATATACCCTCTTCACTTTTCCCGCCAAGCACAGAAGCTTGGCCTTAAATGGCCAAGAGGGTTGCTGCTGTACGGTCCACCAGGCACTGGAAAGACAAGTTTGGTACGGGCAGTTGTTCGGGAATGCGGGGCACATTTGACAATCATCAGTCCGCACTCTGTTCATAGAGCACATGCTGGTGAAAGTGAGAGAATTCTCCGTGAGGCTTTTTCAGAGGCATCATCTCATGTAGCCTTGGGCAAGCCATCAGTTATCTTTATAGATGAAATAGACGCACTCTGTGCTCGTCGAGATTCTAAAAGGGAGCAAGATGCCCGAGTTGCCTCCCAACTCTTTACACTGATGGACTCAAACAAGCCAACCTCTTCTACACCAGGTGTAGTGGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCCCTAAGAAGGTCTGGACGTTTTGATGCTGAAATTGAAGTTACAGTCCCAAATGAAGAGGAACGCTTTCAAATTCTAAAGCTGTATACAAAGAAGATTCCCTTGGATTCATCTGTTGACTTAAAATCCATTGCTGCATCATGCAATGGATATGTCGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGATTGCAGTTAAAAGGTCCTCAAATACAAACAAAGATGCTAGTGATTTCAGTTTAACAATGGAAGATTGGAAAAATGCAAGGTCTGTTGTTGGTCCAAGTATAACTAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGGGGATTGAAAGATTTGAAGAAAAAGCTCCAGCAAGCTGTTGAATGGCCTATGATGCATTCTTCTGCATTTTCAAGATTGGGAATACCCCCTTTCCGCGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCTGCTGCACATGCTGCAAAAGCCTCTTTCTTTTCCTTGAGTGGTGCAGAATTATATTCAATGTATGTTGGAGAGGGAGAAGCTTTGCTTCGTAGAACATTTCAGAGAGCGCGTCTTGCAGCACCCAGTATAATATTTTTTGATGAGGCTGATGTGGTAGCTGGCAAACGAGGTGATAGTTCGAGCAATAGTGCTACGGTTGGAGAGAGGCTCTTATCCACTCTGCTGACTGAGATGGATGGGTTAGAAGAAGCTAAAGGAATCCTCGTGTTGGCAGCTACAAACCGCCCTTATGCAATTGATACTGCACTTACGCGTCCTGGACGATTTGATCGGATTTTATATGTACCACCACCTGATTTGGAGGCTAGATATGAGATACTTTGTATACATACAGCTAAGATGAATATAGGGAGTGATGTTGATCTCAGAAAACTAGCGGAAGATACTGAGCTCTTTACAGGTGCTGAACTAGAAGGATTATGCAACGAAGCTGGAATAGTAGCTCTAAGGGAAGACATATCTGCTAGTTATGTTTTTGACCGTCATTTCCAGATTGTGAAGAATTCTTTAAAACCAGCATTAACAACCGCAGATATTGATTCATACTCATCTTTTATGAAGACCTCATCTCGAGCTTTGCCTAGGCACTTTGAATCAGGTTTCAAACAGATGAGAACAAAACAGAATAGGTTGGGTCCTTTGTCTTTAGTTAAAGTTAGTGTAGTCAGCTGTATATTACTTGCTGCTGCTAAATACTATTTCATGCATGGAGACCAAACTGTAGGTGATATAGCCACCTGA 1815 0.4375 MESRTSSNNQWRAEEAIGGNAEAIQALRELIIYPLHFSRQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTIISPHSVHRAHAGESERILREAFSEASSHVALGKPSVIFIDEIDALCARRDSKREQDARVASQLFTLMDSNKPTSSTPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEERFQILKLYTKKIPLDSSVDLKSIAASCNGYVGADLEALCREATMIAVKRSSNTNKDASDFSLTMEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKDLKKKLQQAVEWPMMHSSAFSRLGIPPFRGILLHGPPGCSKTTLAKAAAHAAKASFFSLSGAELYSMYVGEGEALLRRTFQRARLAAPSIIFFDEADVVAGKRGDSSSNSATVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDTALTRPGRFDRILYVPPPDLEARYEILCIHTAKMNIGSDVDLRKLAEDTELFTGAELEGLCNEAGIVALREDISASYVFDRHFQIVKNSLKPALTTADIDSYSSFMKTSSRALPRHFESGFKQMRTKQNRLGPLSLVKVSVVSCILLAAAKYYFMHGDQTVGDIAT 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00092 604 ProSitePatterns AAA-protein family signature. 425 443 IPR003960 GO:0005524|GO:0016887
Sebi40g00092 604 CDD RecA-like_CDC48_NLV2_r1-like 16 186 - -
Sebi40g00092 604 Gene3D - 457 528 - -
Sebi40g00092 604 FunFam Cell division control protein 48-B-like protein 272 456 - -
Sebi40g00092 604 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 56 75 - -
Sebi40g00092 604 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 403 422 - -
Sebi40g00092 604 FunFam Cell division control protein 48 homolog B 9 187 - -
Sebi40g00092 604 Gene3D - 189 271 - -
Sebi40g00092 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 513 IPR027417 -
Sebi40g00092 604 FunFam spermatogenesis-associated protein 5-like protein 1 456 542 - -
Sebi40g00092 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 269 IPR027417 -
Sebi40g00092 604 PANTHER AAA-FAMILY ATPASE 14 547 - -
Sebi40g00092 604 FunFam Cell division control protein 48 homolog B 189 271 - -
Sebi40g00092 604 SMART AAA_5 318 457 IPR003593 GO:0016887
Sebi40g00092 604 SMART AAA_5 48 190 IPR003593 GO:0016887
Sebi40g00092 604 Pfam ATPase family associated with various cellular activities (AAA) 52 186 IPR003959 GO:0005524|GO:0016887
Sebi40g00092 604 Pfam ATPase family associated with various cellular activities (AAA) 322 454 IPR003959 GO:0005524|GO:0016887
Sebi40g00092 604 Gene3D - 272 456 IPR027417 -
Sebi40g00092 604 Gene3D - 4 187 IPR027417 -
Sebi40g00092 604 Pfam AAA+ lid domain 210 253 IPR041569 -
Sebi40g00092 604 Pfam AAA+ lid domain 477 521 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00092 Sebi-Chr40 1945912 1955183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00092 253 530 Calmodulin-binding Proteins AT3G56690 47.122 3.56e-80 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00092 - - gmx:100814288 1011.52