Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00078 ATGGATCATCATCGCACTGTCAGAAGAAAGAAGTCTAATGAAAATGTACCAAATTACAAACGCTCTTCATCCCAACTTCACCAAGATCATTCCCCTGAGATTCTTTTACATCTGTCGCTTCTCGACAATGCTTTCATAACCTCCGACTCGCATGACAACTCTAACTCAGATGACAACTCTGCAAGGAGAGCTCTTCAACTTATCTCTCTACTCGCCAAAAGCGGGCTTCTTGCTGTCAAACCAGAGTATCAACAACTAATTGTTGATGCTGGAGCCTTGCCCTATCTAGTGGATTTGTTAAGGAGGCACAGGGCTGGTGGCATTTCTCCAGAACTTACTGGTATGCTTAAGAAAGTAGCTGATGCAATAACCAACCTTGCCCATGAGAACACCAGCGTTAAGACCCTCGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGATATCAAGATTGTTGGATGCAATGCATTACCCACTCTTGTACTAATGCTTCGATCAGGCGATCCTACAATACATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCCTCGCCAAATATTAAGAAAGACGTTATTGAAGCTGGGGTTTACAACCAGTCATTGGCTTACTGA 636 0.4355 MDHHRTVRRKKSNENVPNYKRSSSQLHQDHSPEILLHLSLLDNAFITSDSHDNSNSDDNSARRALQLISLLAKSGLLAVKPEYQQLIVDAGALPYLVDLLRRHRAGGISPELTGMLKKVADAITNLAHENTSVKTLVRMEGGIPPLVELLEFNDIKIVGCNALPTLVLMLRSGDPTIHYEAVGVIGNLVHSSPNIKKDVIEAGVYNQSLAY 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00078 211 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 91 141 IPR000225 GO:0005515
Sebi40g00078 211 Pfam Armadillo/beta-catenin-like repeat 157 189 IPR000225 GO:0005515
Sebi40g00078 211 SUPERFAMILY ARM repeat 56 202 IPR016024 -
Sebi40g00078 211 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Sebi40g00078 211 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 75 206 IPR044282 -
Sebi40g00078 211 MobiDBLite consensus disorder prediction 1 28 - -
Sebi40g00078 211 Gene3D - 155 209 IPR011989 -
Sebi40g00078 211 Gene3D - 35 154 IPR011989 -
Sebi40g00078 211 SMART arm_5 80 128 IPR000225 GO:0005515
Sebi40g00078 211 SMART arm_5 130 190 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00078 Sebi-Chr40 1583250 1585292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00078 18 204 U-box Gene Family AT5G42340 27.404 4.11e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00078 - - bvg:104898851 190.274