Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00069 ATGGAACTGGAGGACTTCTGCTGGGTCGGATCACATGATGATGGATCGACCCATATTTGGGGGCCGGTAGAGGACTCATTGGTGTTAGGTTCAACCGGGTTGGAAATCTTTCAACCCGCTTCAGTACTTGTTTCCTCGGAAGACTTGGCACAAGGCGACAGTACCTTCTACTCTCAAACGCCCTCCGTCGAACACCTCACCGATGCTTTCCAATCAGCTTTCTCCGACTGGATCACCGGCGCCGACAACCACCACAATGATGCGGAGGCTGACATCCTCACCTCCCAATGGCTCCTCAAGTACATTCTATTCAGCGTCCCTTACTTGCACGCCAAACACAAGTCCCTACGTGGGAAGGCCACACTGCAACACTACGAGGCGAGTGGCAGCCACGTGCTAGCGGAGCGTCGCCGCCGTGAGAAGCTGAACGAGAGGTTCATCATTCTGAGGTCGTTGGTGCCGTTCGTGACCAAAACGGACAAAGCCTCCATATTAGGTGACACCATCGAGTACGTGAAGCAACTGAGCGATACGGTGCAGAGCCTCGAGGCGCGTAAGCGCCAGATGGAGGCTGATCAACGGCGGAGAATAAACAAGAAGAGGAGGGTTAAGGAAGTTGAGGTGGAGGTTTCAATCATAGGGAATGATGCATTGTTGGAGGTGGAGTGCATGCATAGGGAAGGGTTGTTGGTGGATGTGATGAAAGTGCTGAGGGAGTTAGGGGTGGATGTGATGTTGGTGCAGTCTTCGGTGAATGATGATGGAGTGTTTGTGGCAGAGTTGAGGGCTAAGGTGAAGGAAAATGCAAAGGGGAAGAAGGTTAGTATTGTGGAAGTAAAGAAGGCTCTATACCAGGTTATACCCTATCATCATTGA 876 0.5183 MELEDFCWVGSHDDGSTHIWGPVEDSLVLGSTGLEIFQPASVLVSSEDLAQGDSTFYSQTPSVEHLTDAFQSAFSDWITGADNHHNDAEADILTSQWLLKYILFSVPYLHAKHKSLRGKATLQHYEASGSHVLAERRRREKLNERFIILRSLVPFVTKTDKASILGDTIEYVKQLSDTVQSLEARKRQMEADQRRRINKKRRVKEVEVEVSIIGNDALLEVECMHREGLLVDVMKVLRELGVDVMLVQSSVNDDGVFVAELRAKVKENAKGKKVSIVEVKKALYQVIPYHH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00069 291 Pfam Helix-loop-helix DNA-binding domain 130 175 IPR011598 GO:0046983
Sebi40g00069 291 Gene3D - 126 201 IPR036638 GO:0046983
Sebi40g00069 291 SMART finulus 132 181 IPR011598 GO:0046983
Sebi40g00069 291 Coils Coil 172 192 - -
Sebi40g00069 291 PANTHER TRANSCRIPTION FACTOR TT8 59 287 - -
Sebi40g00069 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Sebi40g00069 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 193 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00069 Sebi-Chr40 1415275 1417208 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00069 70 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 50.000 2.76e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi40g00069 HLH 1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00069 - - aprc:113862120 295.434