Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00066 ATGGCTACGCCGCCAAATAACAACCTTCAAACCATGTTGCAAGCTGCGGTGCAATCGGTCCAGTGGACTTACACCATCTTCTGGCAATTTTGTCCACAACAAGGGATTCTGAAATGGGGTGACGGATACTATAACGGAGCAATTAAGACTCGAAAGACGGTTCAAGCAGTTGAGCTTAGCATGGAAGAGGCGTCACTACAAAGAAGCCAGCAACTGAAAGAGTTGTTTGAATCTCTGTCTGTTGCAGAGACAAACCCTCAAAATCGGAGGCCAAGTGCTGCGTTGTCGCCGGAGGACCTAACGGAATCTGAATGGTTCTATTTGTTGTGTATCTCATTCTCCTTTCATCCTGGTGACGGGTTGGCTGGAGCAGCATATGCCAGGAGGCAGCATTTATGGCTCACCAGTGCAAACCAAGTGGACACCCAAACATTTTCTAGAGCTATTCTTGCCAAGACAGTGGTGTGCATTCCTCTATTAGAGGGCGTCGTTGAGTTCGGCACAACCGATAAGGTTGAAGATGACCTTAATTTCATCCAACATGTAAAGAGCTTCTTCATAGATTACCGTATTCCCATGCCAGAGCCTGCCCTATCAGAACAATCGGCCTCTAATCCCACATGTTCATTCCCTACCTTTGCCACAGCCAATATTTCAAATCAAGATGACATGAACCATGATAAACAAGAAGCCAAATTAGATTCCCAACCAGAAACAGTCCGTAACAGTTTTCCACCAAGCAAAGAACAATTGGATCTGGACACGTTGGATGACTTCCGGGTCGGGTCGCCTAGGGATGGTCCAAACCAGTTGGATTGGTATCCGGAACCGGAAGAGTCGACCCATGTGTGGGCCCCAGTGGAGGAGATGGCAGCGGCACAACAAATACAACAACCAGCTTCAGTACTTGTTCTCTCGGAAGAAATGGCACAAGGCGACACCCACTACTCTCAAACGGTGTCCACCATCCTTCAAAATCAAAACAACTCCGCCAGCTGGTGGCTAGACTCACCCTCCGTTGGCCACGTCACCGATTCCTTCCAATCAGCTTTCACCACGTGGATAACCGTTGCCGATGACCACCTTCATCACGCGGCAATGGACACCATCACCTCCCAGTGTGTCCTCAAGTACATTCTGTTCAGCATCTCTCACTTGCACGCCAACCACAAGGGAACGCTACAAAAATACTCGGCGAGTGGCAGCCACGTGCTTGCCGAGCGTCGGCGCCGCGAGAAGCTAAGCGAGAGGTTCATCATCCTGAGGTCGTTAGTGCCGTTTATGACTAAAACGGATAAAGCGTCCATATTAGGAGACGCCATCGAGTACGTGAAACAACTGCGTGACAGGGTGCAGATCCTCGAGGCGCGTAAACGTCAGATGGAGGCAGATCAACGGTGGAGATCAAATAAGAAGAGGAAGGTGAGGGAGGTTGAGGTAGAACTAGAAGTTTCAATCATTGAGAGTGATGTGTTGTTGGAGGTTGAGTGCATGCATAGGGAAGGGTTATTGGTGGATGTGATGAAAGCGTTGAGGGAGTTAGGGGTGGAAGTGATGTTGGTGCAGTCATCGGTGAAAGATGATGGAGTGTTTGTGGCAGAGTTGAGGGCTAAGGTGAAGGAAAATGAGAAGGGAAAAAAGGTTAGTATTGTGGAAGTGAAAAAGACACTTAACAAGATAATACCTGATCATCATCATCCATATTCGTTAGATGCTAATGGTTCGAGGATGTGTGTGAACTTGGAGTGCATGCAGCATTTTCACGGGATGAGTAGGGAAGACAATAATGCTCATAATTTCGTGTCTGTTGGCATTGTTTCAAACAATGCCTACTCACATATGGTGTGA 1848 0.4794 MATPPNNNLQTMLQAAVQSVQWTYTIFWQFCPQQGILKWGDGYYNGAIKTRKTVQAVELSMEEASLQRSQQLKELFESLSVAETNPQNRRPSAALSPEDLTESEWFYLLCISFSFHPGDGLAGAAYARRQHLWLTSANQVDTQTFSRAILAKTVVCIPLLEGVVEFGTTDKVEDDLNFIQHVKSFFIDYRIPMPEPALSEQSASNPTCSFPTFATANISNQDDMNHDKQEAKLDSQPETVRNSFPPSKEQLDLDTLDDFRVGSPRDGPNQLDWYPEPEESTHVWAPVEEMAAAQQIQQPASVLVLSEEMAQGDTHYSQTVSTILQNQNNSASWWLDSPSVGHVTDSFQSAFTTWITVADDHLHHAAMDTITSQCVLKYILFSISHLHANHKGTLQKYSASGSHVLAERRRREKLSERFIILRSLVPFMTKTDKASILGDAIEYVKQLRDRVQILEARKRQMEADQRWRSNKKRKVREVEVELEVSIIESDVLLEVECMHREGLLVDVMKALRELGVEVMLVQSSVKDDGVFVAELRAKVKENEKGKKVSIVEVKKTLNKIIPDHHHPYSLDANGSRMCVNLECMQHFHGMSREDNNAHNFVSVGIVSNNAYSHMV 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00066 615 Pfam Helix-loop-helix DNA-binding domain 402 448 IPR011598 GO:0046983
Sebi40g00066 615 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 402 465 IPR036638 GO:0046983
Sebi40g00066 615 SMART finulus 404 453 IPR011598 GO:0046983
Sebi40g00066 615 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 398 447 IPR011598 GO:0046983
Sebi40g00066 615 PANTHER TRANSCRIPTION FACTOR TT8 3 562 - -
Sebi40g00066 615 MobiDBLite consensus disorder prediction 225 253 - -
Sebi40g00066 615 Coils Coil 444 464 - -
Sebi40g00066 615 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 186 IPR025610 -
Sebi40g00066 615 Gene3D - 398 474 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00066 Sebi-Chr40 1379186 1389305 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00066 1 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 60.386 6.63e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi40g00066 bHLH-MYC_N 9.1e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00066 - - aprc:113862120 670.233