LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi40g00057	ATGGATCGAGGGCATGAACATGGATCTTACAATATGAATTCTAGACCTTATGATAGGAACATGCCTCCTCCTGTTGATCCTGTGTTACCAGGTTGGTTAGACTGCCCACCACATGGGCAAGAACTGGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATTACATTCCAAGTCAAAAATATACTCCCAAGCAAGCAATTCTTCAACAAAGAGCCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACGCGTTACTATCCAGTATCAGATTGGACAAGAGAAGGGATTAGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCCGTACCTGATGATGAATCTGTAAAACAATTTTGCGATGAGGTTCTGGATTTTCGCTCCCGAAGAACAAACACAGAGAAATATATACTGGTACACTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCATTTTCTTGTGCGTACGGAATCAATTTCTGTCACCGCGGCAATACATAGATTTGCTTGGGCACGTCACCCTGGAATTTACAAGCAGGATTACATTGACGCGCTATACACATTTTATGATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCAGACTGGAAGAGACTTTCTGATCCTGATTTTCATGATGTGGCTGTCCCAGCTGCAGACAATTGTGGAGATATTCCACAGAAGCATATGATTTGCAGTGCTTCCACTGGCTTGAATTCCTTACTTGGATGGATGCTTGCTTGGAAAGAAAATATTGTGAGGAATGAAGTGTTGACAAATGATGATGTTTTGGGAGATTCAATTCCTCCAAACGAGCTGCGTACAATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGACGCTTGCAGTTTCCTGGATCGCATCCTGTTTCTCTGAACAGGGAAAATCTGCAACTCCTAAGACAACGATATTACTATGCCACATGGAAAGCTGATGGGACACGATATATGATGTTAATTACTTGGGATGGATGTTATCTGATTGACAGAAAGTTTCTTTTTCGAAGGATCAATATGCGGTTTCCTTGCAGATACTCAAATGGGGGTATACCTGAGAAGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCACATACAGGGAAGCAAGAGAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTTTGACAGAGCTTCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATCGAACCTCGTAACATGGAACGTGAGGGTCTTTTGAAGAGTATAAATCCTTATTACAGATACGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTATTATCTACTGTATCAAAGCTCCTTCATAATTTCATTCCACAACTCTCGCATTCAGCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCACTGTGAGGTGGGAGCTGGCGGTCGTCCCCTGCTTTTTCTGTTCGAACGTGGAAAAAAGAAGTTAATGGAAGGCAGTAATGTTATTTTTAAAGATTCATCAGATGTTTCTTCCTATTCTGGAAAGATCATTGAGTGCTATTGGGATGCTGCAGAACATCATTGGATCTGTATGCGGATCAGAATTGACAAGGCAACCCCAAATGATATCAACACCTACAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGATGTCCTGTTGAATGAGATACGTGAGATCATTCGCCTACCCTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGCATATGGTCTCTTCACGGCGCAGGTGA	1926	0.4164	MDRGHEHGSYNMNSRPYDRNMPPPVDPVLPGWLDCPPHGQELGCIIPSKVPLGESFNDYIPSQKYTPKQAILQQRALGRELGLVIDLTNTTRYYPVSDWTREGISHVKIRCKGRDSVPDDESVKQFCDEVLDFRSRRTNTEKYILVHCTHGHNRTGYMIVHFLVRTESISVTAAIHRFAWARHPGIYKQDYIDALYTFYDEKKPEDLVCPQTPDWKRLSDPDFHDVAVPAADNCGDIPQKHMICSASTGLNSLLGWMLAWKENIVRNEVLTNDDVLGDSIPPNELRTMQEVCYQLLKLGTGGRGRLQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITWDGCYLIDRKFLFRRINMRFPCRYSNGGIPEKNHHYTLLDGEMIIDTDPHTGKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLLKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHNFIPQLSHSADGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHCEVGAGGRPLLFLFERGKKKLMEGSNVIFKDSSDVSSYSGKIIECYWDAAEHHWICMRIRIDKATPNDINTYRKVMRSIKDNITEDVLLNEIREIIRLPLYADRIQRDIKAHQHMVSSRRR	641

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi40g00057	641	Pfam	mRNA capping enzyme, catalytic domain	312	510	IPR001339	GO:0004484\|GO:0005524\|GO:0006370
	Sebi40g00057	641	ProSitePatterns	Tyrosine specific protein phosphatases active site.	146	156	IPR016130	GO:0016311\|GO:0016791
	Sebi40g00057	641	SMART	dsp_5	61	201	IPR020422	GO:0006470\|GO:0008138
	Sebi40g00057	641	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	124	193	IPR000387	GO:0016311\|GO:0016791
	Sebi40g00057	641	Pfam	Dual specificity phosphatase, catalytic domain	80	199	IPR000340	GO:0008138\|GO:0016311
	Sebi40g00057	641	Gene3D	Protein tyrosine phosphatase superfamily	7	222	IPR029021	-
	Sebi40g00057	641	CDD	RNA_5'-triphosphatase	31	196	-	-
	Sebi40g00057	641	Gene3D	-	545	618	IPR012340	-
	Sebi40g00057	641	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	31	216	IPR029021	-
	Sebi40g00057	641	Gene3D	DNA ligase/mRNA capping enzyme	271	510	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi40g00057	Sebi-Chr40	1255292	1263501	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi40g00057	11	631	Protein tyrosine phosphatase (PTP) family	AT3G09100	61.637	0.0	776

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi40g00057	K13917		-	lang:109348476	1107.43

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