Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00057 ATGGATCGAGGGCATGAACATGGATCTTACAATATGAATTCTAGACCTTATGATAGGAACATGCCTCCTCCTGTTGATCCTGTGTTACCAGGTTGGTTAGACTGCCCACCACATGGGCAAGAACTGGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATTACATTCCAAGTCAAAAATATACTCCCAAGCAAGCAATTCTTCAACAAAGAGCCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACGCGTTACTATCCAGTATCAGATTGGACAAGAGAAGGGATTAGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCCGTACCTGATGATGAATCTGTAAAACAATTTTGCGATGAGGTTCTGGATTTTCGCTCCCGAAGAACAAACACAGAGAAATATATACTGGTACACTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCATTTTCTTGTGCGTACGGAATCAATTTCTGTCACCGCGGCAATACATAGATTTGCTTGGGCACGTCACCCTGGAATTTACAAGCAGGATTACATTGACGCGCTATACACATTTTATGATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCAGACTGGAAGAGACTTTCTGATCCTGATTTTCATGATGTGGCTGTCCCAGCTGCAGACAATTGTGGAGATATTCCACAGAAGCATATGATTTGCAGTGCTTCCACTGGCTTGAATTCCTTACTTGGATGGATGCTTGCTTGGAAAGAAAATATTGTGAGGAATGAAGTGTTGACAAATGATGATGTTTTGGGAGATTCAATTCCTCCAAACGAGCTGCGTACAATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGACGCTTGCAGTTTCCTGGATCGCATCCTGTTTCTCTGAACAGGGAAAATCTGCAACTCCTAAGACAACGATATTACTATGCCACATGGAAAGCTGATGGGACACGATATATGATGTTAATTACTTGGGATGGATGTTATCTGATTGACAGAAAGTTTCTTTTTCGAAGGATCAATATGCGGTTTCCTTGCAGATACTCAAATGGGGGTATACCTGAGAAGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCACATACAGGGAAGCAAGAGAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTTTGACAGAGCTTCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATCGAACCTCGTAACATGGAACGTGAGGGTCTTTTGAAGAGTATAAATCCTTATTACAGATACGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTATTATCTACTGTATCAAAGCTCCTTCATAATTTCATTCCACAACTCTCGCATTCAGCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCACTGTGAGGTGGGAGCTGGCGGTCGTCCCCTGCTTTTTCTGTTCGAACGTGGAAAAAAGAAGTTAATGGAAGGCAGTAATGTTATTTTTAAAGATTCATCAGATGTTTCTTCCTATTCTGGAAAGATCATTGAGTGCTATTGGGATGCTGCAGAACATCATTGGATCTGTATGCGGATCAGAATTGACAAGGCAACCCCAAATGATATCAACACCTACAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGATGTCCTGTTGAATGAGATACGTGAGATCATTCGCCTACCCTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGCATATGGTCTCTTCACGGCGCAGGTGA 1926 0.4164 MDRGHEHGSYNMNSRPYDRNMPPPVDPVLPGWLDCPPHGQELGCIIPSKVPLGESFNDYIPSQKYTPKQAILQQRALGRELGLVIDLTNTTRYYPVSDWTREGISHVKIRCKGRDSVPDDESVKQFCDEVLDFRSRRTNTEKYILVHCTHGHNRTGYMIVHFLVRTESISVTAAIHRFAWARHPGIYKQDYIDALYTFYDEKKPEDLVCPQTPDWKRLSDPDFHDVAVPAADNCGDIPQKHMICSASTGLNSLLGWMLAWKENIVRNEVLTNDDVLGDSIPPNELRTMQEVCYQLLKLGTGGRGRLQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITWDGCYLIDRKFLFRRINMRFPCRYSNGGIPEKNHHYTLLDGEMIIDTDPHTGKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLLKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHNFIPQLSHSADGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHCEVGAGGRPLLFLFERGKKKLMEGSNVIFKDSSDVSSYSGKIIECYWDAAEHHWICMRIRIDKATPNDINTYRKVMRSIKDNITEDVLLNEIREIIRLPLYADRIQRDIKAHQHMVSSRRR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00057 641 Pfam mRNA capping enzyme, catalytic domain 312 510 IPR001339 GO:0004484|GO:0005524|GO:0006370
Sebi40g00057 641 ProSitePatterns Tyrosine specific protein phosphatases active site. 146 156 IPR016130 GO:0016311|GO:0016791
Sebi40g00057 641 SMART dsp_5 61 201 IPR020422 GO:0006470|GO:0008138
Sebi40g00057 641 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 124 193 IPR000387 GO:0016311|GO:0016791
Sebi40g00057 641 Pfam Dual specificity phosphatase, catalytic domain 80 199 IPR000340 GO:0008138|GO:0016311
Sebi40g00057 641 Gene3D Protein tyrosine phosphatase superfamily 7 222 IPR029021 -
Sebi40g00057 641 CDD RNA_5'-triphosphatase 31 196 - -
Sebi40g00057 641 Gene3D - 545 618 IPR012340 -
Sebi40g00057 641 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 216 IPR029021 -
Sebi40g00057 641 Gene3D DNA ligase/mRNA capping enzyme 271 510 - -
Sebi40g00057 641 MobiDBLite consensus disorder prediction 1 22 - -
Sebi40g00057 641 FunFam mRNA capping enzyme family protein 509 618 - -
Sebi40g00057 641 PIRSF mRNA_capping_HCE 10 641 IPR017074 GO:0004484|GO:0006370|GO:0140818
Sebi40g00057 641 PANTHER MRNA-CAPPING ENZYME 18 623 - -
Sebi40g00057 641 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 288 511 - -
Sebi40g00057 641 FunFam mRNA capping enzyme, putative 271 508 - -
Sebi40g00057 641 Pfam mRNA capping enzyme, C-terminal domain 547 609 IPR013846 -
Sebi40g00057 641 SUPERFAMILY Nucleic acid-binding proteins 513 626 IPR012340 -
Sebi40g00057 641 FunFam mRNA capping enzyme family protein 25 236 - -
Sebi40g00057 641 CDD Adenylation_mRNA_capping 283 511 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00057 Sebi-Chr40 1255292 1263501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00057 11 631 Protein tyrosine phosphatase (PTP) family AT3G09100 61.637 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00057 K13917 - lang:109348476 1107.43