Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00040 ATGGCCACTTTCACCAGAACAAAACCTCACGTTAACGTCGGAACTATTGGACACGTGGATCACGGGAAGACCACACTCACTGCAGCAATCACCAAGGTGCTTGCGGATGAAGGGAAAGCTAAGGCTGTAGCCTTTGATGAAATCGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACAATTGCAACGGCACATGTTGAGTATGAGACCGCCAAAAGGCACTATGCACATGTTGACTGCCCTGGACATGCAGATTATGTTAAAAATATGATTACAGGAGCTGCCCAAATGGATGGTGGCATACTTGTTGTGTCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTTTTAAATAAAGTTGATGCTGTCGATGATCCAGAGTTGTTAGAACTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCTATCATTAGAGGTTCAGCATTGTCTGCTTTACAGGGTACAAATGATGAGATTGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTGGATGAGTACATTCCCGACCCTGTTCGCCAGCTTGACAAGCCTTTCCTAATGCCAATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTAGCTACTGGCCGTGTTGAGCAAGGGGTTATCAAAATTGGTGATGAAGTTGAGGTTTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCTGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGACATACAACGTGGTCAGGTCATTGCTAAGCCTGGTTCTTGTAAAACATACAAGAAATTTGAGGCAGAGATTTATGTACTCACAAAGGATGAGGGTGGACGACACACTGCTTTCTTCTCTAACTACAAACCTCAATTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAAATGGTAATGCCTGGAGACAACGTTACTGCCACATTTGAATTGATTTCTCCTGTTCCACTTGAAGCAGGGCAAAGATTTGCCTTGAGAGAGGGTGGCAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAA 1191 0.4442 MATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKIGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSCKTYKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGKVELPENVKMVMPGDNVTATFELISPVPLEAGQRFALREGGRTVGAGVVSKVLS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00040 396 CDD EFTU_II 211 299 IPR033720 -
Sebi40g00040 396 Pfam Elongation factor Tu domain 2 225 295 IPR004161 GO:0005525
Sebi40g00040 396 NCBIfam elongation factor Tu 2 395 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sebi40g00040 396 Gene3D Translation factors 206 336 - -
Sebi40g00040 396 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 8 204 IPR000795 GO:0003924|GO:0005525
Sebi40g00040 396 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 49 64 IPR031157 -
Sebi40g00040 396 PANTHER ELONGATION FACTOR TU-RELATED 6 395 - -
Sebi40g00040 396 CDD EFTU_III 302 391 - -
Sebi40g00040 396 PRINTS GTP-binding elongation factor signature 12 25 IPR000795 GO:0003924|GO:0005525
Sebi40g00040 396 PRINTS GTP-binding elongation factor signature 92 103 IPR000795 GO:0003924|GO:0005525
Sebi40g00040 396 PRINTS GTP-binding elongation factor signature 76 86 IPR000795 GO:0003924|GO:0005525
Sebi40g00040 396 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924|GO:0005525
Sebi40g00040 396 PRINTS GTP-binding elongation factor signature 56 64 IPR000795 GO:0003924|GO:0005525
Sebi40g00040 396 Gene3D - 1 203 IPR027417 -
Sebi40g00040 396 Pfam Elongation factor Tu GTP binding domain 8 201 IPR000795 GO:0003924|GO:0005525
Sebi40g00040 396 NCBIfam small GTP-binding protein domain 11 147 IPR005225 GO:0005525
Sebi40g00040 396 Gene3D Translation factors 340 395 - -
Sebi40g00040 396 FunFam Elongation factor Tu 1 203 - -
Sebi40g00040 396 Hamap Elongation factor Tu [tuf]. 1 396 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sebi40g00040 396 Pfam Elongation factor Tu C-terminal domain 301 394 IPR004160 -
Sebi40g00040 396 CDD EF_Tu 9 203 IPR041709 -
Sebi40g00040 396 FunFam Elongation factor Tu 206 336 - -
Sebi40g00040 396 SUPERFAMILY Translation proteins 205 300 IPR009000 -
Sebi40g00040 396 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 305 395 IPR009001 -
Sebi40g00040 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 226 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00040 Sebi-Chr40 1006848 1010356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00040 6 394 Eukaryotic Initiation Factors Gene Family AT5G60390 30.505 8.62e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00040 K02358 - gmx:100776891 748.043