Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi40g00028 ATGAAGGACAAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATTTCAAGAGCTCAGAATCAGAAACAAGTTCTTCTAAAGAACCAACTTTGGATTCTGAGTCTCAAGATAAGTACTCAAAACCTGGTTCTAGATGGCATGCATTTCTCCAATTGTTGAAGACCAAATCAAAGAAGCCTATATCCACATTGCATCCTCTCAGTGTCCTCAAGCTCTCAAGAAGAATGAGCAGTAGCATGAGGGAGACTATTCTTCCAAGTTGTAGCATAGATGCAGAATCTTTCTTGCAAAAGTCACCATGGAGGATCTTTACCCAACATGAGATACAAATTGCAACCAATTATTTCAGCCAAGAAAATTTTATTGGGAAAGGTGGTTATGCTGATGTTTACAAAGGGTGTTTACCAAATCATCAACTAGTAGCAATTAAAAGGCTAACAAGAGGAACAACAGATGAAACCATAGGGGATTTCTTATCAGAACTTGGCATAATGGCTCATGTAAATCACCCCAATACAGCTAAGTTGGTTGGTTATGGGGTGGAAGGAGGAATGTATCTAGTGCTTGAATTGTCTGAAAAAGGAAGCTTAGCTTCAGTGCTCTATGGTTCCAAGGAGAAATTACCATGGTCTATTAGGCAGAAAATAGCATTAGGAACAGCTGAAGGTATATTATATCTTCATGAAGGTTGTCCAAGAAGAATTATCCATAGAGATATAAAAGCTGCAAATATCTTGCTAACTGAGAACTTTGAGCCACAGATTTGTGATTTCGGACTAGCAAAATGGCTACCAGAGAATTGGACTCACCACAGTGTTTCAAAATTTGAAGGAACTTTTGGATACCTTGCTCCTGAATACTTGCTTCATGGGATAGTAGACGAGAAAACAGATGTATTTGCTTTTGGGGTGTTGCTATTAGAATTAGTCACGGGGCGGCGAGCACTTGATTGTTCACAACAAAGTCTTGTTTTATGGGCAAAACCTTTGCTGAAGAAGAATTATATTAGGGAGCTGATTGATCCTTCACTAGCCGATGACTTTGACTGTCGGCAGATTAATATTATGCTCTTGGCAGCTTCATTATGCATTCAACAATCCTCTATTCGTCGTCCATCTATCAGACAGGTTGTACAGCTTCTGAATGGTAACCTTAGCTGCTTTAAGTACACAAAGAAATCTCGACTTCCATTTTTCTGA 1200 0.3942 MKDKVDSPVGVLEDYFKSSESETSSSKEPTLDSESQDKYSKPGSRWHAFLQLLKTKSKKPISTLHPLSVLKLSRRMSSSMRETILPSCSIDAESFLQKSPWRIFTQHEIQIATNYFSQENFIGKGGYADVYKGCLPNHQLVAIKRLTRGTTDETIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMYLVLELSEKGSLASVLYGSKEKLPWSIRQKIALGTAEGILYLHEGCPRRIIHRDIKAANILLTENFEPQICDFGLAKWLPENWTHHSVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVTGRRALDCSQQSLVLWAKPLLKKNYIRELIDPSLADDFDCRQINIMLLAASLCIQQSSIRRPSIRQVVQLLNGNLSCFKYTKKSRLPFF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi40g00028 399 SUPERFAMILY Protein kinase-like (PK-like) 101 387 IPR011009 -
Sebi40g00028 399 SMART serkin_6 116 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi40g00028 399 Gene3D Transferase(Phosphotransferase) domain 1 193 394 - -
Sebi40g00028 399 MobiDBLite consensus disorder prediction 1 41 - -
Sebi40g00028 399 PANTHER OS08G0249100 PROTEIN 6 390 IPR046958 -
Sebi40g00028 399 Gene3D Phosphorylase Kinase; domain 1 88 190 - -
Sebi40g00028 399 ProSiteProfiles Protein kinase domain profile. 116 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi40g00028 399 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 193 395 - -
Sebi40g00028 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Sebi40g00028 399 Pfam Protein kinase domain 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi40g00028 399 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 87 190 - -
Sebi40g00028 399 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi40g00028 Sebi-Chr40 749760 752412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi40g00028 104 383 Receptor kinase-like Gene Family AT1G53420 41.667 1.84e-66 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi40g00028 Pkinase 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi40g00028 - - gmx:100802873 658.292