Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi409g00053 ATGTCAGGTCGAGGTGGAAGGGAGCGGTTTAGGAGGGATTATCCTTCAAGATGTGAAGATAATAAGGGGAATGGGGTTACTGGGCGTGGCAGTGGCAACAGCAACAACCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTATCCCACAACATTGTAGAGGATGAACTTGCTCATCATTTCTTACAGTTTGGGCCGCTGGAGAGTGTCGCGTTCCAGCCTGGCCGCAGCTATGCTTTCATCAACTTCAAAAGAGATGAAGATGCCATTGATGCCATGAGGGCACTGCAAGGTTTTCCTCTTGATGGCAACCCGTTTAGAATCGAGTTTGCAAAGGCGGTCAGTGTTGCCCACCTTTTACTGCTTGTTACTTTTCCAGCTGATTATATGTATATACCTCAGAAAGTTCAGTTCAGTTCAATTCATTTAATCAAGGCCTTAATATTGGCTTAG 450 0.4644 MSGRGGRERFRRDYPSRCEDNKGNGVTGRGSGNSNNPPSRHLWVGNLSHNIVEDELAHHFLQFGPLESVAFQPGRSYAFINFKRDEDAIDAMRALQGFPLDGNPFRIEFAKAVSVAHLLLLVTFPADYMYIPQKVQFSSIHLIKALILA 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi409g00053 149 PANTHER RNA RECOGNITION MOTIF-CONTAINING 32 122 - -
Sebi409g00053 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 104 IPR000504 GO:0003723
Sebi409g00053 149 SMART rrm1_1 41 108 IPR000504 GO:0003723
Sebi409g00053 149 Gene3D - 19 115 IPR012677 -
Sebi409g00053 149 CDD RRM_SF 42 108 - -
Sebi409g00053 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 112 IPR000504 GO:0003723
Sebi409g00053 149 SUPERFAMILY RNA-binding domain, RBD 29 111 IPR035979 GO:0003676
Sebi409g00053 149 MobiDBLite consensus disorder prediction 1 39 - -
Sebi409g00053 149 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi409g00053 Sebi-Chr409 820453 821441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi409g00053 41 120 Eukaryotic Initiation Factors Gene Family AT2G23350 34.118 9.08e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi409g00053 - - pvu:PHAVU_006G009600g 217.238