Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi409g00048 ATGGCGCATAGGTTGCTGAGGGACCACGAAGCCGACGGCTGGGAACGCTCCGACTTCCCTATCATCTGCGAATCTTGCCTCGGTGACAGCCCCTATACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACTCGGCCATTTACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTTTGTCAAGTTTGCCTTCTAGATCTTGAATATGGGCTGCCAGTTCAAGTCAGGGACACAGCTCTCAGTATCGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGCAAGGCTAGAGCTGGTATAGATTATGAGTCCTCATATGGTAAAGCACGCCCAAATGATACTATTCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCGGTAACCGGGGAGCTGTCTCAACAAAATATTAAAGATCGATATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATCGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTATCCAACAAACTTGTTATTAAGGGCCTGAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCGAAACCTGAGTCCGATGGCTCTGATCAAGTAAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGATCAAACCCAAGGAATGGTTTACTATAACAATCCACCTCCTCCTCAGCAGGAAAGAAGCTATTACCCTTCAATGGATCCTCAAAGAATGGGTGCTCTTGTTCCATCTCAAGATGGTCCTCCTGGTGGGCCTACTGGGTCAGGGGAGAACAAACCCAATTTGGAAAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCGCCTCCACCTGGCCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCACCAGTTCCCCCTTATCAACAGTATCCACCACCGTACAATGCTCCAATGGCTCCATCCCAGCCACCAGCTTCAAATCATCCCTATCAACATTCTATGCAAGCAGGGTCTTCACAGACAGGGTCTGCACCAGCTGAAACTGGAACATCAACATCAGGGTCACAGCAGCAATGA 1431 0.4668 MAHRLLRDHEADGWERSDFPIICESCLGDSPYTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQVRQQASVAHSGLLPRAVISQQQNQDQTQGMVYYNNPPPPQQERSYYPSMDPQRMGALVPSQDGPPGGPTGSGENKPNLEKQQMQHYAHPMMPPPPGQYHHQYYPPYGYMPPVPPYQQYPPPYNAPMAPSQPPASNHPYQHSMQAGSSQTGSAPAETGTSTSGSQQQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi409g00048 476 Gene3D - 209 307 IPR012677 -
Sebi409g00048 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 298 IPR000504 GO:0003723
Sebi409g00048 476 SUPERFAMILY CCCH zinc finger 156 179 IPR036855 GO:0046872
Sebi409g00048 476 MobiDBLite consensus disorder prediction 420 476 - -
Sebi409g00048 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 285 IPR000504 GO:0003723
Sebi409g00048 476 MobiDBLite consensus disorder prediction 301 316 - -
Sebi409g00048 476 MobiDBLite consensus disorder prediction 420 442 - -
Sebi409g00048 476 SMART c3hfinal6 154 180 IPR000571 GO:0046872
Sebi409g00048 476 Gene3D - 146 206 - -
Sebi409g00048 476 Pfam Torus domain 135 191 IPR032297 -
Sebi409g00048 476 FunFam Zinc finger CCCH domain-containing protein 4 146 205 - -
Sebi409g00048 476 MobiDBLite consensus disorder prediction 443 476 - -
Sebi409g00048 476 MobiDBLite consensus disorder prediction 331 349 - -
Sebi409g00048 476 FunFam Zinc finger CCCH domain-containing protein 40 210 306 - -
Sebi409g00048 476 MobiDBLite consensus disorder prediction 297 316 - -
Sebi409g00048 476 SMART rrm1_1 226 294 IPR000504 GO:0003723
Sebi409g00048 476 CDD RRM_RBM22 224 297 - -
Sebi409g00048 476 SUPERFAMILY RNA-binding domain, RBD 218 306 IPR035979 GO:0003676
Sebi409g00048 476 ProSiteProfiles Zinc finger C3H1-type profile. 154 181 IPR000571 GO:0046872
Sebi409g00048 476 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 373 IPR039171 GO:0003723
Sebi409g00048 476 MobiDBLite consensus disorder prediction 331 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi409g00048 Sebi-Chr409 771252 776329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi409g00048 217 286 Eukaryotic Initiation Factors Gene Family AT1G49760 34.667 7.31e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi409g00048 K12872 - gmx:100779917 828.935