Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi409g00034 ATGGGTCACTCACTCTGCTTTAGCTTCGTTGTAATATGGAAATGGGAAGGAGGAGTCATTGCCACCACCACCTCCAGTCCCTTCAGATGTTGTACCAGTCAAGCTGAAGAGGCTTTCCCTGTCCCTGCTGAACCTGTTAAGAAAAAGGTTTCCCGTGTTCCAATAGCTAGACGTGGTTTGGGATCAAAAGGAACAAAAATACCTCTTCAAACCAATCACTTCAAAGTTAATGTCACTAACAATGATGGGCATTTCTTCCATTATAGTGAGACCTATCATTCTGACTTGAATGGTAAGGACTTTGCATATGATGGTGAGAAGAGTCTGTTTACTATTGGCTCCCTTCCTCGAAACAAGCTTGAGTTTGAAGTTGTTCTGGAGGATGTTACATCTAACAGAAATAATGGCAATTGTAGCCCTGATGGAAATGGGGACAATGAGAGTGACAGAAAGAGGATGCGGCGACCATACCGTGCAAAGACATTTAAAGTTGAGATTAGCTATGCTGCAAAAATTCCAATGCAGGCCATTGCCAATGCCTTACGCGGGCAGGAATCTGAGAATTTCCAAGAAGCCATTAGAGTGCTTGATATCATATTGAGACAACATGCTGCTAAGCAAGGCTGCCTACTTGTGCGCCAATCTTTCTTCCACAATGATCCGAATAACTTTGCTGATGTTGGAGGTGGTGTTCTAGGCTGCAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGTGGCCTGTCTCTCAACATAGATGTCTCAACTACCATGGTGATTCAACCTGGGCCTGTGGTGGACTTCTTAATTTCCAATCAAAATGTGAGAGATCCTTTTCAGCTTGACTGGGCAAAGGCCAAAAGGACACTGAAAAACCTGAGGATCAAAACTCACCCATCCAATCAAGAGTTCAAAATTACTGGACTCAGTGAACTCCCATGCAAAGAACAGACTTTTACTCTAAAGAGCAAAGGAAGGGATGGTGATGATAATGCTGAGGAAGTGACTGTATATGATTATTTTGTTAATGTTCGGAAGATAGATCTCCGTTACTCTGGTGATCTTCCATGTATCAATGTTGGCAAGCCTAAACGACCCACATATTTCCCTATTGAGCTTTGTGAATTGGTATCCTTGCAACGATACACAAAAGCTCTGTCCACACTTCAAAGGGCTTCATTAGTGGAGAAGTCCAGGCAGAAAACCACAAGAGCGGATGAAAATTTTGCACTAAGAACCAGCAACTATGGTTCTGAACCTTTGCTTCGTAATTGTGGAATTTCTATAAGCAATGGCTTTACTCAAGTGGAGGGTCGTGTTTTGCCTGCTCCAAGGTTGAAGTTTGGCAATGGTGAGGATTTGAACCCAAGGAATGGGCGTTGGAATTTTGGCAACAAGAAATTTGTGCGGCCAACGAAGATAGAAAGATGGGCTGTGGTTAACTTCTCTGCACGCTGTGATGTACGAGGGCTTGTGAGGGATCTGACTAGAGTTGCAGATATGAAAGGAATTGCGATAGATCCCCCATTTGATGTGTTTGAAGAAAATGGTCAATTTAGGCGTGCTCCTCCTATGGTTAGAGTGGAGAAGATGTTTGAGCTCATCCAGTCTAAACTTCCTGGGGCACCTCAGTTCCTCCTCTGCTTGATTCCTGAACGCAAAAACTGTGAAATTTATGAGAAGGAGGATGAAGGCATTATGAGGCATTTTTTCCCTGATGATCTATGTTATGGGTCTGTCTTAGCTGATGGGTTTCATCTACTGCAGGGAGCTTTGATTGATTTCTATTCAAGTTCTGGGAAGAGAAAACCTGAAAATATAATCATATTCAGGTATCAGAGGAGTACCACTGCAATTTCTGTTGTTGCTCCAATATGCTATGCTCACTTGGCTGCAACACAATTGGGGCACTTCATGAAATTTGAGGACAAATCTGAGACATCTTCAAGCCATGGTGGGCTGAGTACTGCTGGAGCTGTTCCTGTGCCTCCGATGCCCAAATTGCAGGATAATGTCTGTAACTCAATGTTCTTTTGTTGA 2040 0.4314 MGHSLCFSFVVIWKWEGGVIATTTSSPFRCCTSQAEEAFPVPAEPVKKKVSRVPIARRGLGSKGTKIPLQTNHFKVNVTNNDGHFFHYSETYHSDLNGKDFAYDGEKSLFTIGSLPRNKLEFEVVLEDVTSNRNNGNCSPDGNGDNESDRKRMRRPYRAKTFKVEISYAAKIPMQAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMVIQPGPVVDFLISNQNVRDPFQLDWAKAKRTLKNLRIKTHPSNQEFKITGLSELPCKEQTFTLKSKGRDGDDNAEEVTVYDYFVNVRKIDLRYSGDLPCINVGKPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKTTRADENFALRTSNYGSEPLLRNCGISISNGFTQVEGRVLPAPRLKFGNGEDLNPRNGRWNFGNKKFVRPTKIERWAVVNFSARCDVRGLVRDLTRVADMKGIAIDPPFDVFEENGQFRRAPPMVRVEKMFELIQSKLPGAPQFLLCLIPERKNCEIYEKEDEGIMRHFFPDDLCYGSVLADGFHLLQGALIDFYSSSGKRKPENIIIFRYQRSTTAISVVAPICYAHLAATQLGHFMKFEDKSETSSSHGGLSTAGAVPVPPMPKLQDNVCNSMFFC 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi409g00034 679 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 49 559 - -
Sebi409g00034 679 SUPERFAMILY PAZ domain 257 401 IPR036085 GO:0005515
Sebi409g00034 679 CDD PAZ_argonaute_like 262 377 - -
Sebi409g00034 679 Gene3D paz domain 256 382 - -
Sebi409g00034 679 MobiDBLite consensus disorder prediction 132 155 - -
Sebi409g00034 679 Pfam N-terminal domain of argonaute 65 200 IPR032474 -
Sebi409g00034 679 Gene3D - 610 679 IPR036397 GO:0003676
Sebi409g00034 679 SMART DUF1785_2 210 262 IPR014811 -
Sebi409g00034 679 Pfam Argonaute linker 1 domain 212 260 IPR014811 -
Sebi409g00034 679 Pfam Argonaute linker 2 domain 410 448 IPR032472 -
Sebi409g00034 679 Pfam Mid domain of argonaute 455 507 IPR032473 -
Sebi409g00034 679 FunFam Protein argonaute 7 257 382 - -
Sebi409g00034 679 ProSiteProfiles PAZ domain profile. 304 378 IPR003100 GO:0005515
Sebi409g00034 679 Pfam PAZ domain 266 394 IPR003100 GO:0005515
Sebi409g00034 679 SUPERFAMILY Ribonuclease H-like 436 559 IPR012337 -
Sebi409g00034 679 Gene3D - 440 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi409g00034 Sebi-Chr409 532782 540390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi409g00034 596 679 Eukaryotic Initiation Factors Gene Family AT5G43810 31.034 6.99e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi409g00034 K11593 - gmx:100820376 909.442