Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi409g00016 ATGGCACGAGGATCTCCTGAGTTGATTGTTCCTTTGCTACTTTCACAGAATCCAGTGAAGAATAAGGTACTGCGGCTCGTTTGGAGCTGGAAATCACAGTTTTATACAGGCATATCAAGAGCCATGAGTGGTGAAAGAGGGGGTGATGGCCGCAAAATGTCCAAGCGTCGCCGGTCATCATTATCAGGTGAAGAAGCTGGTGGTGGAGATAACTTGGGAGGAGAAGGTCCTCTAAAGAAAGGCCCTGTTGAAGGTGACTTGGGAAGACAAGGTCATCTAAAGAAAGGCCCATGGACATCAGCCGAGGATGTAATTTTGATAGACTATGTTAATAAGCATGGAGAGGGAAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCCCGCTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAAACCAGATCTTAAAAAGGGTGCATTCACTCCAGAGGAAGAGAGCCGAATCATTGAGCTCCATGCTAATATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACAGATAATGAGATAAAGAACTATTGGAACACAAGACTTAAGAGAATGCAACGAGCTGGCTTACCAATCTACCCTGACGAAATATTCCAACGGGTGCTTAATGGCAATCAAGAAAGCCTAAATGCTGGCACCTTGACAAACGAAGCCAGTCAGCATGAAGATCTCTCACAAACAGATAGTTTTGATATACCTGATGTGGAATTCAGAAATTTCAAACTCCGCCGAGGTGTGTTATATGAACCATCAATTTTGGATATGCCTGAAAGCAGCATGCTTGAACAAAATTCAGACTCATCCCATAATTATAGTATGTGGTTGCCAATGATGCCACCCTTAAAGCGCCTCCAGGAGTCAGATATGCTATACAATAGTTTGGACAGTTGTATCAGTAGTGCTGTCCCAGTACTTGATCAGTATGGCAATTATACTTGTAAGAATATTTCTGACCATCCTAATTTGTCTTCTCCATGTGATCCCATTCTTAACACCAGCAAACAGTTTCATGGTGATGACCTCACTGGCAGCCATGCCACTTTAAATGGCAATACTTCTTCTTCTGCCCCCGTATCCGGGGTCATGGAGATGGAGCTCCCTTCACTCCAATATTCACAGACTCAACAAGGTAGCTGGACTGGTCCTGCATCCCCACTTCCTTCACCTGAGTCTGTTGATACATTGATTCAGTCTCCTCCAATTGAGCCCATTCAGTCAGATCCTGTTTCTCCACAGAGCAGTGGTTTGCTGGAAGCAATATTCTACAACTCAAAGAGTTTGCAAGGCTCAAATATTGGCTCACTGCAAGAGACAACTGATAATTGTGTGCCCACTGAAGCCATCAAGAGTTCAACTTTGATTCCCCATAAGACAGAACGCGATGAACTAGGGGAGCCAAATTCCCCCTTAGGTCAGTCTACTGCTTCAGTTGTGACTGACTATAATCCTTTTAGCACATATTCAGTGGATGGGCTCCAATCAGTGACAAAAACTCAGGATCATAATCATGAAGCAGTTACAGAGTTCCCAGCTTCCTATTCCAAGAAGAAAGAAATTTTGAATCAGATAGATTTTACTCGGCCTGACGCTTTGCTTGACTTGGGTTGGTTAGGGAACAGCACTGAGTATGGCAAGGATCAAATTCTTCTAAAAGATGCTCTAAATACATTTATTGAAGATTTCCATGTTTAG 1725 0.4377 MARGSPELIVPLLLSQNPVKNKVLRLVWSWKSQFYTGISRAMSGERGGDGRKMSKRRRSSLSGEEAGGGDNLGGEGPLKKGPVEGDLGRQGHLKKGPWTSAEDVILIDYVNKHGEGNWNAVQKYSGLARCGKSCRLRWANHLKPDLKKGAFTPEEESRIIELHANMGNKWARMAAELPGRTDNEIKNYWNTRLKRMQRAGLPIYPDEIFQRVLNGNQESLNAGTLTNEASQHEDLSQTDSFDIPDVEFRNFKLRRGVLYEPSILDMPESSMLEQNSDSSHNYSMWLPMMPPLKRLQESDMLYNSLDSCISSAVPVLDQYGNYTCKNISDHPNLSSPCDPILNTSKQFHGDDLTGSHATLNGNTSSSAPVSGVMEMELPSLQYSQTQQGSWTGPASPLPSPESVDTLIQSPPIEPIQSDPVSPQSSGLLEAIFYNSKSLQGSNIGSLQETTDNCVPTEAIKSSTLIPHKTERDELGEPNSPLGQSTASVVTDYNPFSTYSVDGLQSVTKTQDHNHEAVTEFPASYSKKKEILNQIDFTRPDALLDLGWLGNSTEYGKDQILLKDALNTFIEDFHV 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi409g00016 574 Gene3D - 150 196 - -
Sebi409g00016 574 CDD SANT 97 142 IPR001005 -
Sebi409g00016 574 ProSiteProfiles Myb-like domain profile. 143 193 IPR001005 -
Sebi409g00016 574 Pfam Myb-like DNA-binding domain 148 191 IPR001005 -
Sebi409g00016 574 Pfam Myb-like DNA-binding domain 95 142 IPR001005 -
Sebi409g00016 574 SUPERFAMILY Homeodomain-like 93 189 IPR009057 -
Sebi409g00016 574 CDD SANT 150 193 IPR001005 -
Sebi409g00016 574 MobiDBLite consensus disorder prediction 45 63 - -
Sebi409g00016 574 MobiDBLite consensus disorder prediction 382 402 - -
Sebi409g00016 574 Gene3D - 94 147 - -
Sebi409g00016 574 FunFam Transcription factor GAMYB 150 196 - -
Sebi409g00016 574 FunFam MYB-related transcription factor 94 147 - -
Sebi409g00016 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 142 IPR017930 -
Sebi409g00016 574 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 66 559 - -
Sebi409g00016 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 197 IPR017930 -
Sebi409g00016 574 SMART sant 94 144 IPR001005 -
Sebi409g00016 574 SMART sant 147 195 IPR001005 -
Sebi409g00016 574 MobiDBLite consensus disorder prediction 41 95 - -
Sebi409g00016 574 ProSiteProfiles Myb-like domain profile. 90 142 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi409g00016 Sebi-Chr409 330655 337766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi409g00016 91 571 MYB Transcription Factor Family AT5G06100 39.596 1.82e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi409g00016 Myb_DNA-binding 8.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi409g00016 K09422 - gmx:100800658 687.182