Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi409g00012 ATGGCTCCTCCTAAGAATGTTGTTGAAGCTGCATCTGCATCTTCCCGTGATAGTGACGTTGTTGGATTGCATCTTCCTCCAGCGGTTACTAACAAAAGGGTTTGTCCTCACTGCAAACGTGAATTCAAAAATGGAAAAGCCCTTGGAGGACATATTAAAATCCATTTCAAAGATAGAAGGAGGACTAGGAGCAGCAAACTTAAAAAAAACAGAGTAGGACAAAATCTTCTCTCTCCTTTGACCGGAAGAACAAGTGTATACATGCCCACTTTCCATGCTGTTCTTGGTCATGTCAATGACAGTAGTTGTTCAACATCCATTGCTGCTGCTTCCATGGAGGTTGATCAAGTTGTCGTTCAGGAAAATCGAGAAGCAGTTGCTATTAATGTTGATGATGAAGTTGCTAATGGATCAATTGATCAAAATGTGTCAAATTTGGACCCTCCCAAAAGACTTGATTTTGATTTGAATGAGATGCCTCCTGAGGAGGATTGA 495 0.4101 MAPPKNVVEAASASSRDSDVVGLHLPPAVTNKRVCPHCKREFKNGKALGGHIKIHFKDRRRTRSSKLKKNRVGQNLLSPLTGRTSVYMPTFHAVLGHVNDSSCSTSIAAASMEVDQVVVQENREAVAINVDDEVANGSIDQNVSNLDPPKRLDFDLNEMPPEED 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi409g00012 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Sebi409g00012 164 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Sebi409g00012 164 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 12 163 IPR044653 GO:0003700
Sebi409g00012 164 MobiDBLite consensus disorder prediction 139 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi409g00012 Sebi-Chr409 235591 236370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi409g00012 34 77 C2H2 Transcription Factor Family AT3G53820 41.071 2.53e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi409g00012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi409g00012 - - var:108345409 63.5438