Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi409g00009 ATGGATAAAATTAAGCATGAAGGTTCAGATCACGATGGAGAAGGAGAACCCTCTGCAGAAGAGGCAGGGAAGAAGATAAAGATATCTCCTTTGAGGTCTTGTGAAGTTGAAGCTGATGAGGCGGTTTCTGTTGAGAACACAGCTCCAAAAACACGTGAGTGCAATATCTGCGGCAAGACTTTCAGCAACGGAAAAGCATTGGGTGGTCACAGAAGATTCCACTTTCAAGAAGCCAGAAAGTATCCACATAAGGTGAAAACCCTATTATTAAATAAAGTTAACAATAGGGCTAGTTCTGATGGGAAACACAAATGTTCAATTTGCAACAAGGAATTCACATCCAAGAACGCCTTGTTTGGTCACATGAGGTCCCACCCTAAGGACAAGAAGGGTCTGTGCCCTCTTAGTGCTAATAAGAACACTTCTTCTTCCTCCCATAATTCTGATTCTTCTTTTGAACAGAATGATAAAGAGGATCAAGATCATGGTAAGGTTGTTGCACCAGATGAGCATACATTCATTGATCTTTCAAAATCCAATTTACCAAGCTGGAAAAAGAAAGATAAAAGAGGAAGAAAATGTATTGGTGGTTATGAAGCTGCTGAAAATCTTATGTACATTTATGCTGAGTTATACTCTTGTGATGATCTTCCCAAGAAGAGGACTGCTGTTGAGCCAAAGAGTCCTCAAGTTTCAATCCCAGCTAAGAAAAGGAAGATTATTGGTGAATCATCATCTAGTGAAGTGAAGAAGATCAAATTCGTTTTTGGTGGTTCATTCAAGTTTGGGGAAGAATCTGAGAGGGGTGGTGACTGTAATGATAGTGATAAGCTGAATAGAAAAAAGCATGATGTGAATGAGAGTCCTGAGAAAATTAACATTGAAGCCAATCTTGGTGCTGATGTGAAGAAGGTGCAGAAAGGAAAGAAGAGTAAGAAGGACTCAGTGTATGAAAATGAAACTCAAGAGAAACCAGGTGCGTATAAATGTGGCATTTGTAGTAAATCTTTTTCTACTTTCCAAGGCTTAGGAGGACACAGATCAGTTCACAAACAGAAGAACATTGAAACCATGAATGAAGAGAATCAGCCAAACATTGCTGCAGTGGCTGAAGAAAACAATTCTTCTGGTTGTAGCAATGTGCCTAAAGTGGATGAGATTGAGACACCCCTGAGTGAAGAAACACTGACACTGACAGATGAGGCTAGTCAGTCTACAACAAAATTGGACTTTGATCTGAATGAGCCATATGTTATGGAGGAGGTCTAA 1269 0.398 MDKIKHEGSDHDGEGEPSAEEAGKKIKISPLRSCEVEADEAVSVENTAPKTRECNICGKTFSNGKALGGHRRFHFQEARKYPHKVKTLLLNKVNNRASSDGKHKCSICNKEFTSKNALFGHMRSHPKDKKGLCPLSANKNTSSSSHNSDSSFEQNDKEDQDHGKVVAPDEHTFIDLSKSNLPSWKKKDKRGRKCIGGYEAAENLMYIYAELYSCDDLPKKRTAVEPKSPQVSIPAKKRKIIGESSSSEVKKIKFVFGGSFKFGEESERGGDCNDSDKLNRKKHDVNESPEKINIEANLGADVKKVQKGKKSKKDSVYENETQEKPGAYKCGICSKSFSTFQGLGGHRSVHKQKNIETMNEENQPNIAAVAEENNSSGCSNVPKVDEIETPLSEETLTLTDEASQSTTKLDFDLNEPYVMEEV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi409g00009 422 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Sebi409g00009 422 Gene3D Classic Zinc Finger 46 130 - -
Sebi409g00009 422 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Sebi409g00009 422 SMART c2h2final6 52 74 IPR013087 -
Sebi409g00009 422 SMART c2h2final6 103 125 IPR013087 -
Sebi409g00009 422 SMART c2h2final6 328 350 IPR013087 -
Sebi409g00009 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 328 355 IPR013087 -
Sebi409g00009 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Sebi409g00009 422 MobiDBLite consensus disorder prediction 399 422 - -
Sebi409g00009 422 SUPERFAMILY beta-beta-alpha zinc fingers 49 78 IPR036236 -
Sebi409g00009 422 MobiDBLite consensus disorder prediction 135 150 - -
Sebi409g00009 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Sebi409g00009 422 SUPERFAMILY beta-beta-alpha zinc fingers 101 133 IPR036236 -
Sebi409g00009 422 ProSitePatterns Zinc finger C2H2 type domain signature. 330 350 IPR013087 -
Sebi409g00009 422 MobiDBLite consensus disorder prediction 1 26 - -
Sebi409g00009 422 Gene3D Classic Zinc Finger 300 366 - -
Sebi409g00009 422 MobiDBLite consensus disorder prediction 151 169 - -
Sebi409g00009 422 MobiDBLite consensus disorder prediction 119 169 - -
Sebi409g00009 422 Pfam C2H2-type zinc finger 327 352 - -
Sebi409g00009 422 Pfam C2H2-type zinc finger 52 74 - -
Sebi409g00009 422 Pfam C2H2-type zinc finger 103 127 - -
Sebi409g00009 422 SUPERFAMILY beta-beta-alpha zinc fingers 327 354 IPR036236 -
Sebi409g00009 422 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 93 420 IPR044653 GO:0003700
Sebi409g00009 422 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi409g00009 Sebi-Chr409 175019 176287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi409g00009 38 74 C2H2 Transcription Factor Family AT2G28200 51.351 9.88e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi409g00009 zf-C2H2_6 7.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi409g00009 - - aprc:113854137 303.138