Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi408g00049 ATGTCCCAACCAACACCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACCTGCTCACAACTGGATGGAGTACTTTTGTTACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGAACAATGGGGAATTACGTGTGGGAGTGAGGCGTCTTGCTCGTCAGCCGAGTAGCATGCCATCGTCTGTGATCTCCAGTCAGAGCATGCACCTAGGAGTCCTTGCAACTGCCTCTCATGCCGTTGCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAAGCGTGAACAAGTACTTGGAGGCTATAAACAATAAGTTCAGTGTTGGCATGAGGTTCAAGATGAGGTTTGAGGGGGATGCTGCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAGTGGAAGATATTTCTCCCCATTGGGTGAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTCACAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTGTCTTCTACTCCTACTCCCCCTGTTCAACCTACAGTTGTAAAGACGAAAAGGCCTCGACCACCCAGTGAAATTCCAGATGTTGACACAACATCGGCCACCTCAGTTTTCTGGGATTCTGGGCTAACTCAGGCTGATAGGACACAACTTAGTGTTTTATCTGAAAGCAAAAGAAGTGATAGTACTGGTATGTGGCATCATAAGCAAATTGATATGAATAGTAAAAGTAACAGCAACACTGTTATATCGAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCCCATTCTAGTTGTCCTTCTCATGTATTTCCGGACACAACAGATGATAGCAAGAGTGTCTCAGCATGGCCTGTTTCAAAGCCTAACTCATCCAAACTGAACATCGATCATGTGCTTGATCAAGTTGACAAGGAGAACAAAGTTGAGTCTGGTACAAGTTATCGATTGTTTGGAATTGAGCTTATCGATCATTCCAGAAACTCACCTGCTGTTGAGAAGGCACCTTCACATGCAGTAAATGTACCCAGAGTTACCACTGAGGTCTGTGCAAGCACCTTGTCCAGAACTGATACTGGTCATAAGTCTGATGTCCCAAAGGCTTCTAAGGAGAGGAAACAAGAACAGCAGCAAATATCAACACAGGAGACTCAGAGCATGCAAATTTGTGGCAGAAGTCGCACCAAGGTTAAAATGCAGGGCGTTGCAGTGGGTCGTGCTGTGGATTTGACCATGTTGGATGGGTACAATCAACTTATAGATGAATTGGAGGAGATGTTTGACATAAAGGGACAACTTCGACACAGGAATATGTGGAAAATTGTCTTCACTGATAATGAAGGGGATGACATGCTTATGGGCGATCATCCATGGCTTGAATTTTGTAATGTGGTGAGAAAAATCTCCATTCTTTCCAGCCAGGATTTGAAGATGAGTTCAGGAAGCAAACCACCAATCTCTTCAATGGAAGAAGGGACTGTAATAAGCTCAGACACAACCGAAACCTGA 1608 0.4422 MSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRLARQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAINNKFSVGMRFKMRFEGDAAAETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEPAAVTRPDRVSPWEIEPFVSSTPTPPVQPTVVKTKRPRPPSEIPDVDTTSATSVFWDSGLTQADRTQLSVLSESKRSDSTGMWHHKQIDMNSKSNSNTVISRNQTEGSWLSSPHSSCPSHVFPDTTDDSKSVSAWPVSKPNSSKLNIDHVLDQVDKENKVESGTSYRLFGIELIDHSRNSPAVEKAPSHAVNVPRVTTEVCASTLSRTDTGHKSDVPKASKERKQEQQQISTQETQSMQICGRSRTKVKMQGVAVGRAVDLTMLDGYNQLIDELEEMFDIKGQLRHRNMWKIVFTDNEGDDMLMGDHPWLEFCNVVRKISILSSQDLKMSSGSKPPISSMEEGTVISSDTTET 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi408g00049 535 Gene3D - 422 512 - -
Sebi408g00049 535 SUPERFAMILY CAD & PB1 domains 422 502 - -
Sebi408g00049 535 ProSiteProfiles PB1 domain profile. 425 506 IPR000270 GO:0005515
Sebi408g00049 535 Gene3D - 1 71 IPR015300 -
Sebi408g00049 535 SMART B3_2 1 72 IPR003340 GO:0003677
Sebi408g00049 535 Gene3D - 131 205 - -
Sebi408g00049 535 CDD B3_DNA 4 70 IPR003340 GO:0003677
Sebi408g00049 535 MobiDBLite consensus disorder prediction 393 410 - -
Sebi408g00049 535 FunFam Auxin response factor 131 204 - -
Sebi408g00049 535 SUPERFAMILY DNA-binding pseudobarrel domain 2 99 IPR015300 -
Sebi408g00049 535 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Sebi408g00049 535 Pfam Auxin response factor 96 177 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi408g00049 535 MobiDBLite consensus disorder prediction 198 230 - -
Sebi408g00049 535 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 510 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi408g00049 535 MobiDBLite consensus disorder prediction 511 535 - -
Sebi408g00049 535 Pfam B3 DNA binding domain 5 70 IPR003340 GO:0003677
Sebi408g00049 535 MobiDBLite consensus disorder prediction 384 419 - -
Sebi408g00049 535 Pfam AUX/IAA family 472 509 IPR033389 -
Sebi408g00049 535 Pfam AUX/IAA family 405 461 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi408g00049 Sebi-Chr408 906324 908803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi408g00049 1 516 B3 DNA Binding Superfamily AT4G23980 53.861 3.88e-171 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi408g00049 AUX_IAA 3.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi408g00049 K14486 - gmx:100779003 871.692